Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_024365.1 Length=51090 Score E Sequences producing significant alignments: (Bits) Value seq13651 327 4e-85 >seq13651 Length=3921 Score = 327 bits (362), Expect = 4e-85 Identities = 526/746 (71%), Gaps = 16/746 (2%) Strand=Plus/Minus Query 39944 ATGTGGGCCTCATCTGCCTTCACGAAGCAAGGTCGCACAGTGCTGGGCCAAGCCGAACAG 40003 |||||||| || || || || |||| |||| ||| ||||| ||||| || ||| || Sbjct 1969 ATGTGGGCATCGTCCGCGTTTGAGAAGAAAGGGCGCCATGTGCTCGGCCAGGCTGAAGAG 1910 Query 40004 GTTGCGTTCCGTGCCGGTGGTTGGCAGAAGGCCCGGATGGAGCAGCAGATGCGTGACTGG 40063 || ||| | ||||||||||| |||||||||||| | ||||| ||||||||| |||| ||| Sbjct 1909 GTAGCGATGCGTGCCGGTGGCTGGCAGAAGGCCAGAATGGAACAGCAGATGTGTGAGTGG 1850 Query 40064 TTCGGCTGCGTACCGAGCTACATCATCACCCTGGCTGCCGATTACTGCTCACAGTGCAGC 40123 |||||| || |||| | ||||||||| ||||||||||| |||||||||||||| Sbjct 1849 TTCGGCGAGGTGCCGAAATTCATCATCACGCTGGCTGCCGACTACTGCTCACAGTGTTCT 1790 Query 40124 GATGCGGACTTCTGTGCACTGGTCGAGCATGAGCTCTACCACATCGCCCAGGCAGTCGAT 40183 ||||| || || || || ||| ||||||||||||| ||||||||||| |||||| || Sbjct 1789 GATGCTGAGTTTTGCGCCCTGATCGAGCATGAGCTTTACCACATCGCGCAGGCAACAGAC 1730 Query 40184 CAGTACGGCGCGCCCAAGTTCACGCAAGACGGATTACCAAAGCTTGAGATGCGCGGCCAT 40243 | | |||||| || || |||| | || || || ||| || |||||||||| Sbjct 1729 GATTTCGGCGCACCGAAATTCAACAAGGAAGGCCAGCCGGTGCTGAAGCTGCGCGGCCAC 1670 Query 40244 GACGTCGAAGAGTTCGTCGGTGTGGTCAGGCGCTATGGGGCAAGCCCAGACGTTCAGCTA 40303 ||||| |||||||| || || || || | || ||||| || ||| || |||||| | Sbjct 1669 GACGTTGAAGAGTTTGTTGGCGTAGTTCGCCGGTATGGCGCCAGCGTGGAAGTTCAGGAA 1610 Query 40304 CTGGTCGACGCTGCAAACAAACCTGCCGAAGTCGGCA-AACTCAATATTTCAAGGGCTTG 40362 ||||| || || || |||| || || || || |||| |||| || ||| | || || || Sbjct 1609 CTGGTTGATGCGGCCAACAGGCCCGCGGAGGT-GGCACAACTAAACATTGCCAGAGCGTG 1551 Query 40363 CGGAACCTGTCTTCTCAAGCTGGCCTGAGGA-TAGACAGCAATAGACGGAACCCTACCCT 40421 ||| | ||| | || | |||||| | | | | ||| | | | ||||| | | | Sbjct 1550 CGGTAACTGCATGCTGAGGCTGGCGTAAATATTGGACTGTATTGGACGG-ATGGTGATTT 1492 Query 40422 ATGGCAGCCCTGAGCAGCGAGGTGAAGGCCTTCATCGTTCAGGCTCTTGCCTGCTTCGAT 40481 ||||| || | | || || || ||||||||| ||||| | ||||| ||||| ||| Sbjct 1491 ATGGCTGCATTAAAACCAGATGTAAAAGCCTTCATCATTCAGTCGCTTGCGTGCTTTGAT 1432 Query 40482 ACACCCTCACAGGTGGCAGAGGCCGTCAAGCGAGAATTCAACATCGAGGTGAGCCGTCAG 40541 || || | ||| | ||| ||||| | ||| || | | | | |||||| Sbjct 1431 ACCCCTACGTTGGTCGTGGAGTCCGTCCAAAAAGAGTTTGGGCTAAAAATCACGCGTCAG 1372 Query 40542 CAGGTGGAGTCACACGACCCCACCAAGCGATGCAGTAAAACCCTGGCCAAGCGTTGGGTG 40601 ||||| || || |||||||| || ||| || | || | ||||| ||| ||||| Sbjct 1371 CAGGTTGAATCTCACGACCCGACAAAGGTTAGCGGCAAGTCGCTGGCTAAGAAGTGGGTA 1312 Query 40602 GACATGTTCC--ACGACGCGCGAGAGAGGTTC-CGCCACCAGGCGATT---GACATACCC 40655 ||| |||||| |||||||| ||| || ||| | || | ||| || || || Sbjct 1311 GACCTGTTCCATACGACGCGGGAGCGA--TTCAAGACA----GAAATTTCAGATATTCCG 1258 Query 40656 ATCGCCAACCGGGCCTACAGGCTTCG 40681 ||||||||| ||||||| |||| || Sbjct 1257 ATCGCCAACAAGGCCTACCGGCTGCG 1232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163295001123296