Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq12857 190 4e-43 seq1592 181 2e-40 seq2779 168 1e-36 seq121 149 1e-30 seq1483 122 2e-22 >seq12857 Length=4317 Score = 190 bits (210), Expect = 4e-43 Identities = 170/213 (80%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 ||||||||| |||||||||||||| ||||| ||||| |||||||| || | | ||| || Sbjct 3832 CAGAACTAAATGCAGAGTAGATTCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATC 3891 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||| ||||||||||||||||| || | ||| |||||||| ||||| || ||||| || || Sbjct 3892 TTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGTTGATCCGGAGGGATGCCTTCTTTGTC 3951 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 ||||| || ||||| ||||||||||| ||||| | || |||||||| || || || Sbjct 3952 CTGAATTTTGGCTTTGACATTTTCAATTGTATCGGATGCCTCGACTTCCAATGTGATGGT 4011 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || || | ||||| || || |||||||| Sbjct 4012 CTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4044 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| |||||||| || | ||| ||||| ||||| ||||| ||||||| Sbjct 4044 TACCACCACGTAGACGAAGAACTAAATGTAAAGTTGATTCCTTCTGAATATTGTAATCAG 4103 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| ||||| ||||||||||| |||||||| | ||| || ||||| |||| Sbjct 4104 AAAGCGTGCGACCATCTTCGAGTTGTTTTCCTGCAAAGATCAATCTCTGCTGATCCGGAG 4163 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| ||||| || ||||| ||||| || ||||||||| | || | Sbjct 4164 GGATACCTTCCTTATCCTGAATTTTGGCTTTGACATTCTCTATCGTATCAGATGCCTCGA 4223 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || || || || || | ||||| || || |||||||| Sbjct 4224 CTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4272 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | ||| || || | || || |||||||||||||| ||||||||||| || Sbjct 3590 CCGCCTCTAAGACGGAGTACAAGATGTAGTGTAGATTCTTTCTGAATATTATAATCTGAC 3649 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | ||||| || || || || || || || || |||||||| ||||| ||||| Sbjct 3650 AAAGTACGTCCGTCCTCGAGCTGCTTGCCCGCGAAAATCAGTCTTTGCTGATCAGGAGGA 3709 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || || |||||||| || || |||||||| || |||||||| || ||||| Sbjct 3710 ATGCCCTCTTTGTCTTGAATTTTAGCCTTTACATTCTCGATCGTATCCGAAGCCTCTACC 3769 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || || || |||||||| || || || || || ||||| Sbjct 3770 TCCAAAGTGATAGTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCAT 3816 >seq1592 Length=29089 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||||| ||| || |||||||| || || || || | Sbjct 413 TACCACCACGTAGACGAAGAACCAAGTGCAAAGTTGACTCTTTCTGAATGTTGTAGTCGG 472 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | |||||||| || ||||||||||||||||| | |||||| |||||||| | Sbjct 473 AAAGCGTGCGGCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGGG 532 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||| ||||| || ||||| ||||| || ||||| || || ||| | Sbjct 533 GGATGCCTTCTTTATCCTGAATTTTCGCTTTGACATTCTCGATCGTGTCTGAAGCTTCAA 592 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||||| || || ||||| || ||||| || || ||||| ||||||||| Sbjct 593 CCTCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGACAAAGATCTGCATT 642 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | |||| |||||| |||||||| ||||| || || ||||| ||||| | Sbjct 185 TACCTCCGCGAAGTCGCAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGG 244 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||||| || || || || || || || || | ||| || ||||| |||| Sbjct 245 ACAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAG 304 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || |||||||| || ||||| ||||| || |||||||| || |||| Sbjct 305 GGATGCCTTCTTTGTCTTGAATTTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCTA 364 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || || || || ||||| || || || || || ||||| Sbjct 365 CTTCCAAAGTAATAGTTTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 413 Score = 113 bits (124), Expect = 9e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 82626 TGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGT 82685 || ||||| ||||| || | | | ||||| || || || || || || || || | | Sbjct 1 TGAATATTGTAATCGGACAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAAT 60 Query 82686 CTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATC 82745 || || ||||| ||||| || ||||| || |||||||| || ||||| ||||| |||||| Sbjct 61 CTCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGAATTTTGGCTTTGACATTCTCAATC 120 Query 82746 GTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATC 82805 |||||| | || |||||||| || || || || || || | ||||| || || ||| Sbjct 121 GTATCAGATGCCTCGACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAATC 180 Query 82806 TGCAT 82810 ||||| Sbjct 181 TGCAT 185 >seq2779 Length=20704 Score = 168 bits (186), Expect = 1e-36 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| ||||||||| || |||||||| || || ||||||||||| || ||| |||| || Sbjct 8161 CGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAAAGAGTTCTGCCA 8220 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || || ||||| || || | ||| ||||| ||||| |||||||| || Sbjct 8221 TCTTCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGGAATTCCTTCTTTG 8280 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || || ||||||||||| || || || || || || ||| ||||| | ||| || Sbjct 8281 TCCTGGATTTTTGCTTTTACGTTCTCGATGGTGTCTGAAGCTTCGACTTCAAGAGTAATG 8340 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || |||||||| | || || ||||| ||||||||| Sbjct 8341 GTTTTGCCTGTAAGAGTTTTCACAAAGATCTGCATT 8376 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | |||||| || | || || || ||||| ||||| ||||| ||||| || Sbjct 8377 CCTCCACGAAGACGCAGGACCAGATGAAGCGTGGATTCCTTCTGGATATTGTAATCGGAA 8436 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| |||| || ||||| |||||||| ||||| || || || | || ||||| || || Sbjct 8437 AGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCGAAAATCAGACGCTGCTGATCCGGGGGA 8496 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| || || || || || || || || |||||||| || ||||| || ||| ||| Sbjct 8497 ATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATGGTATCTGAAGCTTCAACT 8556 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || || |||||||| | ||||||||||| ||||||||| Sbjct 8557 TCAAGGGTGATGGTTTTGCCTGTGAGAGTCTTTACAAAGATCTGCATT 8604 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | |||||| || | || || || ||||| ||||| ||||| ||||| || Sbjct 8605 CCTCCACGAAGACGCAGGACCAGATGAAGTGTGGATTCCTTCTGGATATTGTAATCGGAA 8664 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| |||| || ||||| || |||||||| |||||||| || | || ||||| || || Sbjct 8665 AGAGTTCTGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAGGCGCTGCTGATCAGGTGGA 8724 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||||||||| ||||| ||||| || || || ||| || |||||| Sbjct 8725 ATGCCTTCCTTGTCTTGAATCTTGGCTTTAACATTCTCTATAGTGTCAGAAGCTTCTACC 8784 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || | || || || || || || | || || || || || ||||| || Sbjct 8785 TCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATTTGCATGAT 8834 >seq121 Length=74473 Score = 149 bits (164), Expect = 1e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 |||| || || ||||||||||| ||| | | || ||||| || |||||||||||||||| Sbjct 8121 CTTTTTGGATGTTATAATCAGAGAGAGTACGTCCATCTTCCAGCTGTTTTCCAGCAAAGA 8180 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | |||| || |||||||| || ||||| || ||||| |||||||| ||||| ||||||| Sbjct 8181 TAAGTCGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGAATCTTGGCTTTCACATTTT 8240 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 | || |||||| | |||||| || | ||| || || || || || | || || || | Sbjct 8241 CGATGGTATCAGAGGCTTCTACCTCGAGAGTAATGGTTTTACCAGTGAGGGTTTTGACGA 8300 Query 82801 ATATCTGCAT 82810 | |||||||| Sbjct 8301 AAATCTGCAT 8310 >seq1483 Length=30179 Score = 122 bits (134), Expect = 2e-22 Identities = 103/127 (81%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||| ||| ||||| || ||||||| |||||||||||||| ||||| || || || Sbjct 23248 ACCACCTCGCAAGCGCAGTACCAAGTGCAAGGTAGATTCTTTCTGAATATTGTAGTCGGA 23307 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | ||||| ||||| | ||| || ||||||||||| | |||||| |||||||| || Sbjct 23308 TAAAGTCCTACCATCTTCCAATTGCTTGCCAGCAAAGATCAATCTTTGCTGATCTGGCGG 23367 Query 82703 TATTCCT 82709 |||||| Sbjct 23368 AATTCCT 23374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981364218156556