Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1592 125 7e-24 seq12857 113 4e-20 seq2779 91.5 1e-13 >seq1592 Length=29089 Score = 125 bits (138), Expect = 7e-24 Identities = 141/186 (76%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 133476 TGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAAATGAGC 133535 || |||||||||||| || ||| |||||| ||||||||||||||| |||| | Sbjct 1 TGAATATTGTAATCGGACAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAAT 60 Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TTGAGCTGCTCAAC 133594 | |||||| || ||||| |||||||| ||||| ||| ||| || |||| | ||||| Sbjct 61 CTCTGCTGATCCGGAGGAATGCCTTCTTTGTC-TTGAATTTTGGCTTTGACATTCTCAAT 119 Query 133595 CGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAAT 133654 ||| || | | ||| || || | |||| |||||| ||||| ||||| || |||||||| Sbjct 120 CGTATCAGATGCCTCGACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAAT 179 Query 133655 CTGCAT 133660 |||||| Sbjct 180 CTGCAT 185 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||||| || || || |||||||||||| || ||| |||||| ||| Sbjct 208 AAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGACAAGGTGCGTCCGTCCTCCAGC 267 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||||||| |||| | | |||||| || |||||||||||||| ||||| ||| Sbjct 268 TGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGTC-TTGAAT 326 Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || |||| | ||| | ||| || | | ||| || || | || | ||||| || Sbjct 327 TTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCTACTTCCAAAGTAATAGTTTTTCC 386 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||| ||||| Sbjct 387 CGTCAAGGTTTTGACGAAAATTTGCAT 413 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/201 (70%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACG--AGTCCTCGAGCTGCTTGC 133521 ||||| || ||||| |||||||||||| || || ||| ||| || ||||| || | Sbjct 673 GTGGATTCCTTCTGAATATTGTAATCGGACAAGGT--ACGTCCGTCTTCAAGCTGTTTCC 730 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | ||||||||||| || || || || || ||||| ||||| || Sbjct 731 CGGCGAAAATCAAGCGCTGCTGGTCAGGTGGAATACCCTCTTTGTCCTGAATCTTCGCCT 790 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| | || || || |||| || | ||||| || || | | Sbjct 791 TTACGTTCTCGATAGTGTCAGAGGCTTCAACTTCGAGAGTTATAGTTTTTCCAGTTAATG 850 Query 133642 TTTTTACGAAAATCTGCATGG 133662 | || || ||||||||||||| Sbjct 851 TCTTCACAAAAATCTGCATGG 871 >seq12857 Length=4317 Score = 113 bits (124), Expect = 4e-20 Identities = 152/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514 ||||| || || |||||||| ||||| ||||| || || ||| |||||||||| Sbjct 3613 ATGTAGTGTAGATTCTTTCTGAATATTATAATCTGACAAAGT--ACGTCCGTCCTCGAGC 3670 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||||||| |||| || | ||||| || ||||| ||||| || ||||| ||| Sbjct 3671 TGCTTGCCCGCGAAAATCAGTCTTTGCTGATCAGGAGGAATGCCCTCTTTGTC-TTGAAT 3729 Query 133575 TTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| | ||| | | ||| | ||| || | | ||| || || | |||| ||||| || Sbjct 3730 TTTAGCCTTTACATTCTCGATCGTATCCGAAGCCTCTACCTCCAAAGTGATAGTTTTTCC 3789 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||| |||||||| ||||| Sbjct 3790 TGTCAAAGTTTTGACGAAAATTTGCAT 3816 Score = 109 bits (120), Expect = 5e-19 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||||| || || || ||||| ||||||||||| | |||| ||| | || ||||| Sbjct 4067 AAATGTAAAGTTGATTCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCA-TCTTCGAG 4125 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || | || | | |||||| || |||||||| |||||||| || ||| Sbjct 4126 TTGTTTTCCTGCAAAGATCAATCTCTGCTGATCCGGAGGGATACCTTCCTTATCC-TGAA 4184 Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| || | ||| | ||| || | | ||| || || | |||| |||||| | Sbjct 4185 TTTTGGCTTTGACATTCTCTATCGTATCAGATGCCTCGACTTCCAATGTGATGGTTTTAC 4244 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||||| || |||||||||||||| Sbjct 4245 CGGTGAGAGTCTTGACGAAAATCTGCAT 4272 Score = 100 bits (110), Expect = 3e-16 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || ||||| ||||||||||| | |||| ||| | || || || Sbjct 3839 AAATGCAGAGTAGATTCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCA-TCTTCAAG 3897 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || |||| | | ||| || || |||||||||||||| ||||| ||| Sbjct 3898 TTGTTTTCCAGCAAAAATCAATCTCTGTTGATCCGGAGGGATGCCTTCTTTGTC-CTGAA 3956 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | |||| || |||| | ||| || || | |||| ||| || | Sbjct 3957 TTTTGGCTTTGACATTTTCAATTGTATCGGATGCCTCGACTTCCAATGTGATGGTCTTAC 4016 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||||| || |||||||||||||| Sbjct 4017 CGGTGAGAGTCTTGACGAAAATCTGCAT 4044 >seq2779 Length=20704 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| |||||||||||| | || || || ||||| || || Sbjct 8635 GTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTTCTGCCATCTTCCAGCTGTTTTCCG 8694 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || || |||||||| || || || |||||||||||||| ||| || |||| Sbjct 8695 GCAAAGATCAGGCGCTGCTGATCAGGTGGAATGCCTTCCTTGTC-TTGAATCTTGGCTTT 8753 Query 133584 AGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | | ||| | ||||| | | || || || | ||||| |||||| || || ||||| Sbjct 8754 AACATTCTCTATAGTGTCAGAAGCTTCTACCTCAAGGGTGATGGTTTTCCCAGTGAGAGT 8813 Query 133643 TTTTACGAAAATCTGCATG 133661 ||| ||||| || |||||| Sbjct 8814 TTTCACGAAGATTTGCATG 8832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483198402260960