Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1488 98.7 2e-15 seq249 84.2 5e-11 >seq1488 Length=30156 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/188 (73%), Gaps = 8/188 (4%) Strand=Plus/Minus Query 305293 TGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATC 305352 ||||||||| || ||| | || || |||||| ||| |||| ||| | || ||||| Sbjct 15031 TGATATTGTCGAAAGGCATCTTAAGGATGATGATTTGGTGTTGTTTAATCGACAGCCATC 14972 Query 305353 ACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATT---ATCTGGATTGACATT 305409 |||||||| | ||| ||||| || |||| ||| ||||| | | || ||||| Sbjct 14971 TTTGCATAAATTAAGTATAATGGCGCACAAAGCCAAGGTATTGAAACATCGA---ACATT 14915 Query 305410 TCGATTAAATGTAAG-TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGA 305468 | |||| |||| | | |||| || | ||||||||||| ||||| || || || ||||||| Sbjct 14914 TAGATTCAATGAATGCTGCT-GTGCACCTTATAATGCAGATTTCGACGGTGACGAAATGA 14856 Query 305469 ATATGCAT 305476 || ||||| Sbjct 14855 ATCTGCAT 14848 >seq249 Length=60283 Score = 84.2 bits (92), Expect = 5e-11 Identities = 114/154 (74%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| | || || | |||||||||||||| ||||||| |||| |||||||| || Sbjct 44014 TTCAATCGTCAGCCGACTCTGCATAAAATGTCAATGATGGGTCATCGCGTCAAAGTGTTG 43955 Query 305396 TC-TGGATTGACATTTCGATTAAATGTAAG-TGCTTGTACGCCTTATAATGCGGATTTTG 305453 | |||| | || || || | ||| | || ||| || |||| |||||||| || || | Sbjct 43954 CCGTGGAGT-ACGTTCCGCATGAATCTGAGCTGCACGT-CGCCCTATAATGCAGACTTCG 43897 Query 305454 ATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 | || || ||||||||| |||| || || || || Sbjct 43896 ACGGCGACGAAATGAATTTGCACGTTCCGCAGTC 43863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186253156940644