Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_024783.1 Length=44332 Score E Sequences producing significant alignments: (Bits) Value seq680 170 5e-38 >seq680 Length=42727 Score = 170 bits (188), Expect = 5e-38 Identities = 436/663 (66%), Gaps = 32/663 (5%) Strand=Plus/Plus Query 745 CCGCACCAGGTCGAACTACTGCGGGACACGAAGACTAAAATCCTCGGCCTGTGTTCCGGC 804 ||||||||| |||| |||||| |||| | ||| ||||| ||||||||||| || ||| Sbjct 33341 CCGCACCAGTTCGACCTACTGGAAGACATCACGACGAAAATTCTCGGCCTGTGCTCGGGC 33400 Query 805 TTCGGCGGCGGCAAGTCATGGGTCGCAGCCCGTAAGGTAATCCAGCTTTTAACCCTGAAC 864 | |||||||| || | |||||||| | ||||| | |||||||| | | |||| Sbjct 33401 TATGGCGGCGGTAAAACTTGGGTCGCGGTGCGTAAAGCGATCCAGCTGATGATTTTGAAT 33460 Query 865 CCGGGTCATGATGGCATCGTTACAGAACCGACTATTCCCCTCCTGGTTA---AAATCATG 921 ||||| || || || |||| |||||||| | || ||| | | | | | Sbjct 33461 CCGGGGTGCGACGGTATGATTACCGAACCGACG---CACCCACTGTTAACGCAGGTGCTT 33517 Query 922 TATCCAGAATTGGAGAAGGCTTTCGACGAGGCTGGCTTCCGGTGGAAGTTCAACAAGCAG 981 ||||| ||| | || | ||| | || ||| ||| | || | ||||| |||||| | Sbjct 33518 TATCCCGAACTTGAAACGGCGCTTGATGAGTACGGCATTCGATACAAGTTTAACAAGGTG 33577 Query 982 GACAAGATCTATAGCGTTCTGGT----------GAAAGGCAAATGGACCCGCG------- 1024 || ||||| | || ||| |||| |||| | | | | |||| Sbjct 33578 GAGAAGATTTTTA-CGTGCTGGGTTTGGGATGAGAAAATCCAGCGCAACCGCCGCACACG 33636 Query 1025 --TGATCTGTGAATCAATGGAGAACTATACCCGTCTGATCGGGGTCAACGCCGCGTGGAT 1082 | ||||||| ||| ||||| ||||||| || | |||| || |||||||||||| Sbjct 33637 TATCATCTGTGCATCGATGGAAAACTATAAACGCTTAGTCGGTGTTAACGCCGCGTGGTG 33696 Query 1083 TGTTGCCGACGAGTTCGACACCACGAAGCAAGACGTCGCA---ATGGCGGCTTATCACAA 1139 ||| ||||||||||||||| || | | ||||||||| |||||| | || Sbjct 33697 TGTGATGGACGAGTTCGACACCTCGGCGGAGGACGTCGCATATATGGCG---TTCGTGAA 33753 Query 1140 ATTGCTCGGTCGTCTGCGTGCGGGCGTGGTCCGTCAGTTTGTCATCGTATCCACGCCGGA 1199 | |||| |||||||||||| || || || ||| | | || || ||||| || || Sbjct 33754 ACTGCTGGGTCGTCTGCGTCGCGGTAAAGTGCGCCAGATGATTATTGTGTCCACACCTGA 33813 Query 1200 AGGCTTCCGGGCAATGTATCAAATTTTCGAGGTGGAGAAGGATAGCCAGAAACGTTTGAT 1259 ||| ||||| || ||||| | || |||| ||| ||| ||| || | || Sbjct 33814 AGGTTTCCGCGCGATGTACCGCATCTTCGTCACTGAGTTGGACGAGATGAAGCGGCTTAT 33873 Query 1260 CCGGGCGAAGACCACCGACAACCACCATTTACCGGCAGACTTTATCGACACGCTGCGCAG 1319 | |||||||| |||||||| ||| | |||| ||||| |||| | ||||| | Sbjct 33874 CAAAGCGAAGACGCGCGACAACCCGCATCTGCCGGAAGACTATATCAAGACGCTCGAAAA 33933 Query 1320 TCAGTACCCGGCGAACCTTATTGACGCGTACCTGAACGGCCTGTTTGTTAACCTTACGTC 1379 || ||| || | | | || |||||||| |||||| ||| || ||| | ||| | Sbjct 33934 ACAATACTCGAAAGAGTTGGTAGAGGCGTACCTAAACGGCGAGTTCGTCAACATGACGGC 33993 Query 1380 GGG 1382 ||| Sbjct 33994 GGG 33996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141678852537712