Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2779 131 4e-25 seq12857 118 3e-21 seq1592 116 9e-21 seq121 102 2e-16 >seq2779 Length=20704 Score = 131 bits (144), Expect = 4e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || ||||| ||||| || ||| | ||||| ||| ||| ||| Sbjct 8372 CAGATCTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTCAGAC 8313 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| ||||| |||||| || || || |||||||||||| || || || Sbjct 8312 ACCATCGAGAACGTAAAAGCAAAA-ATCCAGGACAAAGAAGGAATTCCTCCCGATCAGCA 8254 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || || || ||||| |||||| |||||||||| || ||| | ||||||| || | Sbjct 8253 ACGTCTCATTTTTGCCGGTAAGCAGCTGGAAGATGGCAGAACTCTTTCCGATTATAATAT 8194 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || ||||| |||||| | |||||| ||||||| Sbjct 8193 TCAAAAGGAATCTACACTTCACTTAGTTTTGCGACTTCG 8155 Score = 114 bits (126), Expect = 3e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| ||||| | || || ||| ||||||||| | || Sbjct 8816 AAAACTCTCACTGGGAAAACCATCACCCTTGAGGTAGAAGCTTCTGACACTATAGAGAAT 8757 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||||||||| || ||||| ||| || || || | || ||||| Sbjct 8756 GTTAAAGCCAA-GATTCAAGACAAGGAAGGCATTCCACCTGATCAGCAGCGCCTGATCTT 8698 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||||| ||| |||||||||| || ||| | |||||||||| ||||||| || || Sbjct 8697 TGCCGGAAAACAGCTGGAAGATGGCAGAACTCTTTCCGATTACAATATCCAGAAGGAATC 8638 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || || || | ||||| Sbjct 8637 CACACTTCATCTGGTCCTGCGTCTTCG 8611 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||| |||||| | |||||| ||||| || || || | |||||| || | | ||| Sbjct 8155 CGAAGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAAAGAGTT 8214 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || ||||||||||||||||| ||||| || || || ||||| ||| Sbjct 8215 CTGCCATCTTCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGA 8259 >seq12857 Length=4317 Score = 118 bits (130), Expect = 3e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | ||||||||||| ||||||||||| || || ||| || || |||| Sbjct 3802 CAAAACTTTGACAGGAAAAACTATCACTTTGGAGGTAGAGGCTTCGGATACGATCGAGAA 3743 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||| || |||||||| ||||| || ||| || || |||||||| || || Sbjct 3742 TGTAAAGGCTAAAATTCAAGACAAAGAGGGCATTCCTCCTGATCAGCAAAGACTGATTTT 3683 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| | || || ||| | |||||| | ||||| || | |||||||| || Sbjct 3682 CGCGGGCAAGCAGCTCGAGGACGGACGTACTTTGTCAGATTATAATATTCAGAAAGAATC 3623 Query 206364 TACTCTTCACCTTGT 206378 ||| || || ||||| Sbjct 3622 TACACTACATCTTGT 3608 >seq1592 Length=29089 Score = 116 bits (128), Expect = 9e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || |||||||| || ||||||||||| || ||| || || |||| Sbjct 399 CAAAACCTTGACGGGAAAAACTATTACTTTGGAAGTAGAGGCTTCAGATACGATCGAGAA 340 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||| |||||||| |||||||| || ||||| || ||| | || | Sbjct 339 TGTCAAAGCCAAA-ATTCAAGACAAAGAAGGCATCCCTCCGGATCAGCAGAGATTGATTT 281 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||| || |||||| |||| || ||| | || ||| |||||||||| | || || || | Sbjct 280 TCGCGGGCAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAATATTCAAAAGGAAT 221 Query 206363 CTACTCTTCACCTTGTTTTGAGACTTCG 206390 | ||||| || | |||||| ||||||| Sbjct 220 CCACTCTGCATTTAGTTTTGCGACTTCG 193 Score = 102 bits (112), Expect = 2e-16 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| | || ||||| || ||||| ||||| || ||| ||| ||| Sbjct 638 CAGATCTTTGTCAAAACCTTGACGGGAAAGACCATCACATTGGAGGTTGAAGCTTCAGAC 579 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| ||| ||||| || |||||||| || || || || Sbjct 578 ACGATCGAGAATGTCAAAGCGAAA-ATTCAGGATAAAGAAGGCATCCCCCCAGATCAGCA 520 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||| | ||||| || ||||| ||| | ||||| || | || | |||| |||||| | Sbjct 519 AAGATTGATCTTTGCTGGAAAACAGCTTGAAGACGGCCGCACGCTTTCCGACTACAACAT 460 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||||||||| ||| | ||| | ||| Sbjct 459 TCAGAAAGAGTCAACTTTGCACTTGGTT 432 >seq121 Length=74473 Score = 102 bits (112), Expect = 2e-16 Identities = 137/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| ||||| || ||||| || ||| | || || ||| ||||| Sbjct 8307 CAGATTTTCGTCAAAACCCTCACTGGTAAAACCATTACTCTCGAGGTAGAAGCCTCTGAT 8248 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| || |||||| || ||||| |||||| || || || Sbjct 8247 ACCATCGAAAATGTGAAAGCCAA-GATTCAGGATAAAGAGGGAATTCCACCAGATCAGCA 8189 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||||||||| || ||||| ||| ||||||||||| | ||| | | ||||| ||| | Sbjct 8188 GCGACTTATCTTTGCTGGAAAACAGCTGGAAGATGGACGTACTCTCTCTGATTATAACAT 8129 Query 206352 CCAGAAAG 206359 ||| |||| Sbjct 8128 CCAAAAAG 8121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181263510924484