Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_026017.1 Length=41880 Score E Sequences producing significant alignments: (Bits) Value seq680 172 1e-38 >seq680 Length=42727 Score = 172 bits (190), Expect = 1e-38 Identities = 346/510 (68%), Gaps = 20/510 (4%) Strand=Plus/Plus Query 1448 CCCCACCAATACGAGCTATTGGCGGATACCACGACAAAGATAATCGGGCTGTGTTCCGGA 1507 || ||||| | ||| ||| ||| || | |||||| || || |||| ||||| || || Sbjct 33341 CCGCACCAGTTCGACCTACTGGAAGACATCACGACGAAAATTCTCGGCCTGTGCTCGGGC 33400 Query 1508 TTCGGGGGTGGTAAAACGTACAGTGCCGCGCGTAAAGCGGTGCATCTGGCTCTTCTCAAC 1567 | || || |||||||| | || | |||||||||| | || ||| || | || Sbjct 33401 TATGGCGGCGGTAAAACTTGGGTCGCGGTGCGTAAAGCGATCCAGCTGATGATTTTGAAT 33460 Query 1568 CCTGGTGTAGACGGAATAATAACCGAGCCAACGTTCCCTCTGTTGGTGCAGGTTATGTTT 1627 || || ||||| || || ||||| || ||| ||| ||||| |||||| | | | Sbjct 33461 CCGGGGTGCGACGGTATGATTACCGAACCGACGCACCCACTGTTAACGCAGGTGCTTTAT 33520 Query 1628 CCAGAACTTACGGCGGCGCTGGACTTCTTCGGCGTTAAATACAAGTTCAACAAGGTTGAG 1687 || |||||| ||||||| || | |||| || ||||||||| |||||||| ||| Sbjct 33521 CCCGAACTTGAAACGGCGCTTGATGAGTACGGCATTCGATACAAGTTTAACAAGGTGGAG 33580 Query 1688 TCTATTTTTTATTGC-------GACATCA----ATGGA---CAAACA----ACACGTATT 1729 |||||| ||| | || | || | ||| | |||||||| Sbjct 33581 AAGATTTTTACGTGCTGGGTTTGGGATGAGAAAATCCAGCGCAACCGCCGCACACGTATC 33640 Query 1730 ATCTGCGGAAGCATGGAGAACTATCAGCGACTTA-TCGGGATAAACGCCGCGTGGTGTGT 1788 ||||| | | ||||| |||||| | || |||| |||| | ||||||||||||||||| Sbjct 33641 ATCTGTGCATCGATGGAAAACTATAAACG-CTTAGTCGGTGTTAACGCCGCGTGGTGTGT 33699 Query 1789 GTGTGACGAGTTTGATACCGCTAAGCAAGAAACGGCTTATGCCGCGTACATGAAGCTGCT 1848 | |||||||| || ||| | | | || || ||| |||| | |||| ||||| Sbjct 33700 GATGGACGAGTTCGACACCTCGGCGGAGGACGTCGCATATATGGCGTTCGTGAAACTGCT 33759 Query 1849 GGGTCGTCTTCGTAGGGGTAACGTGCGTCAATTGGTAATAGTGTCCACCCCCGAGGGATT 1908 ||||||||| ||| | ||||| ||||| || || | || |||||||| || || || || Sbjct 33760 GGGTCGTCTGCGTCGCGGTAAAGTGCGCCAGATGATTATTGTGTCCACACCTGAAGGTTT 33819 Query 1909 CAGGGCTATGTACCAGATATTCGTAACCGA 1938 | | || ||||||| || ||||| || || Sbjct 33820 CCGCGCGATGTACCGCATCTTCGTCACTGA 33849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133835881787216