Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq6272 100 9e-18 seq6750 95.1 4e-16 seq3496 95.1 4e-16 seq195 95.1 4e-16 >seq6272 Length=10413 Score = 100 bits (110), Expect = 9e-18 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 2760 GTGTTTATG-GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCC 2818 |||||||| || ||| |||||||||||||||||| |||||||||||||||||| ||||| Sbjct 6006 GTGTTTATATGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCC 6065 Query 2819 TGGTTCAACCCCGGGCTTCAGC 2840 ||||||| |||||| ||| || Sbjct 6066 CGGTTCAATCCCGGGTTTCGGC 6087 >seq6750 Length=9685 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| ||||| ||||||| | Sbjct 1882 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAATC 1941 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1942 CCGGGTTTCGGC 1953 >seq3496 Length=17552 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| ||||| ||||||| | Sbjct 13494 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAATC 13435 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 13434 CCGGGTTTCGGC 13423 >seq195 Length=64004 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| ||||||||||| | | Sbjct 31405 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCTGGTTCGATC 31346 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 31345 CCGGGTTTCGGC 31334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15843219842580