Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1592 114 1e-20 seq2779 100 3e-16 seq12857 93.3 4e-14 >seq1592 Length=29089 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||| |||||||||| |||||| || |||| ||||||||||| ||||| || Sbjct 223 TCCTTTTGAATATTGTAATCGGACAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAA 282 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 ||||| | |||||| |||| ||| | || || |||| | ||| ||| || || | | | Sbjct 283 ATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGT-CTTGAATTTTGGCTTTGACATT 341 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||| || | || || |||| || || ||||| |||||||| ||||| || Sbjct 342 CTCGATCGTATCTGAAGCCTCTACTTCCAAAGTAATAGTTTTTCCCGTCAAGGTTTTGAC 401 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 402 GAAAATTTGCAT 413 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| |||||||| || | |||| ||| | || ||||| ||||| |||||||||| Sbjct 641 TTCCGCCACGTAATCTGAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCGG 700 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 |||||| || |||| || ||||| || || || || ||||| ||||||||||| | | Sbjct 701 ACAAGGTACGTCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCAGGTG 760 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||| |||||| ||||| ||| | | | | ||||| | ||| | Sbjct 761 GAATACCCTCTTTGTCCTGAATCTTCGCCTTTACGTTCTCGATAGTGTCAGAGGCTTCAA 820 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || | || || ||||| || || || || |||||||| |||||||| Sbjct 821 CTTCGAGAGTTATAGTTTTTCCAGTTAATGTCTTCACAAAAATCTGCAT 869 Score = 107 bits (118), Expect = 2e-18 Identities = 137/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 35552 TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAAC 35611 ||||| |||||||||| |||||| || |||| ||||||||||| ||||| || ||||| Sbjct 1 TGAATATTGTAATCGGACAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAAT 60 Query 35612 CGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCAC 35670 | |||||| |||| ||||| || || |||| | ||| ||| || || | | | | | Sbjct 61 CTCTGCTGATCCGGAGGAATGCCTTCTTTGT-CTTGAATTTTGGCTTTGACATTCTCAAT 119 Query 35671 CGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATAT 35730 ||| || | || || |||| ||||| |||||||| || | ||| || || || || Sbjct 120 CGTATCAGATGCCTCGACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAAT 179 Query 35731 CTGCAT 35736 |||||| Sbjct 180 CTGCAT 185 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||||| | | ||||| || || || ||| || ||||||||||| |||| Sbjct 415 CCACCACGTAGACGAAGAACCAAGTGCAAAGTTGACTCTTTCTGAATGTTGTAGTCGGAA 474 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || ||||| || || ||||| ||||| | ||||| || | || Sbjct 475 AGCGTGCGGCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGGGGG 534 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || || || ||| ||| ||| || || | | | | | |||||| | ||| || Sbjct 535 ATGCCTTCTTTATCC-TGAATTTTCGCTTTGACATTCTCGATCGTGTCTGAAGCTTCAAC 593 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||||| ||||| || || |||||||| ||||| ||||| |||||||||| Sbjct 594 CTCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGACAAAGATCTGCATTC 643 >seq2779 Length=20704 Score = 100 bits (110), Expect = 3e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||| || ||||||| | |||| | || |||||||||||||| ||||| Sbjct 8185 TCCTTTTGAATATTATAATCGGAAAGAGTTCTGCCATCTTCCAGCTGCTTACCGGCAAAA 8244 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || ||||| || | ||||| | || |||||| ||| |||||||| ||| Sbjct 8245 ATGAGACGTTGCTGATCGGGAGGAATTCCTTCTTTGTCCTGGAT-TTTTGCTTTTACGTT 8303 Query 35666 -GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | ||| || || | || || ||||| || || | ||||||||| Sbjct 8304 CTCGATGGTGTCTGAAGCTTCGACTTCAAGAGTAATGGTTTTGCCTGTAAGAGTTTTCAC 8363 Query 35725 AAATATCTGCATTC 35738 ||| |||||||||| Sbjct 8364 AAAGATCTGCATTC 8377 >seq12857 Length=4317 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 35533 ATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTG 35592 ||||| ||| || || ||||| || ||||| | ||| || || |||| || ||||| Sbjct 3613 ATGTAGTGTAGATTCTTTCTGAATATTATAATCTGACAAAGTACGTCCGTCCTCGAGCTG 3672 Query 35593 CTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 ||| ||||| || |||| | ||||| || | ||||| || ||| ||||| ||| || Sbjct 3673 CTTGCCCGCGAAAATCAGTCTTTGCTGATCAGGAGGAATGCCCTCTTTGTCT-TGAATTT 3731 Query 35653 TTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCG 35711 | || || | | | | | ||| || | || ||||||| ||||| ||||| || | Sbjct 3732 TAGCCTTTACATTCTCGATCGTATCCGAAGCCTCTACCTCCAAAGTGATAGTTTTTCCTG 3791 Query 35712 TCAAAGTTTTCACAAATATCTGCAT 35736 |||||||||| || || || ||||| Sbjct 3792 TCAAAGTTTTGACGAAAATTTGCAT 3816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450586212404320