Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_026640.1 Length=7796 Score E Sequences producing significant alignments: (Bits) Value seq8046 165 4e-37 >seq8046 Length=7925 Score = 165 bits (182), Expect = 4e-37 Identities = 415/621 (67%), Gaps = 10/621 (2%) Strand=Plus/Plus Query 1950 GAGGGCGATTGGAAGCACATAGCCAATTTTCTTAGGTACCAGTGTGTAGAAGTGATAACA 2009 || || |||||||||| |||| || ||| | ||| | ||| | ||||| | | || Sbjct 4045 GAAGGAGATTGGAAGCCTATAGTAAAGTTTTTAAGGCATCAGGGGGTAGAGTTCGTGTCA 4104 Query 2010 TTTATAAATGCATTGAAAGATCTACTAAAAAGAATCCCGAA-AAGAACGTGCATA-TGTA 2067 || | ||| || || | ||||| | | || || ||||| |||||| ||| Sbjct 4105 TTCCTTGCTGCCTTTAAGTCATTTTTAAAAGGTGTGCCCAAGAAGAAT-TGCATAGTGTT 4163 Query 2068 TAGTGGGACCCCCAGATACAGGAAAGTCAGCATTCTGTCTGAGCCTCCTAGGATTTTTCG 2127 | ||| ||| |||||||||| || ||| ||||| |||| || | || | | Sbjct 4164 TTATGG-ACCTGCAGATACAGGCAAATCATATTTCTGCATGAGTCTTTTGCAGTTCCTAG 4222 Query 2128 GTGGTAAGGTTATTTCGTTTACAAATCACAAAAGTCAGTTTTGGCTGCAGCCTCTCGCGG 2187 |||| || || || | | | ||| || || || |||||||||||||| | || | Sbjct 4223 GTGGCGCTGTAATATCATATGCCAATTCCAGTAGCCACTTTTGGCTGCAGCCCTTAGCTG 4282 Query 2188 ATACCAGGTTGGCACTATTAGATGATGCAACCAGGACCAC--CTGGGACTATATGGATGC 2245 | | | | | | |||| | || ||||| || || ||| |||| ||||| ||| | Sbjct 4283 ACAGTAAGATAGGACTACTGGACGATGCGAC--GGCCCAGTGCTGGACGTATATTGATAC 4340 Query 2246 GTTCCTCAGAAACGCACTAGATGGGAACACTATATGTTTAGATGTCAAGCATAAGGCCCC 2305 | || || ||| ||||||||| ||| | | || |||| || |||||| ||| Sbjct 4341 ATATCTTAGGAACCTACTAGATGGAAACCCCTTCAGTATAGACAGGAAACATAAGACCCT 4400 Query 2306 TATGCAGATAAGATGTCCGCCATTACTGATTACTAGCAATATAAATATTAACGATGACGA 2365 ||||||||| |||||| |||||| |||| || | ||| |||||| | || || || Sbjct 4401 GCTGCAGATAAAATGTCCTCCATTAATGATAACAACCAACATAAATCCTCTAGAGGAGGA 4460 Query 2366 TAGATGGCGCTACCTGACAAGCAGAGTATATGTAGTTGAGTTTAAGAGTCCCTTTCCCTT 2425 |||||| || || ||||||||| | || |||||| | || |||||||| Sbjct 4461 CAGATGGAAGTATTTGCGCAGCAGAGTAACACTGTTTAAGTTTACCAACCCATTTCCCTT 4520 Query 2426 TA-ACGAGGAGGGAGAGCCAGTGTACCAATTAACTGAAGTAAACTGGAAATGCTTTTTCA 2484 | | |||| ||||| | |||| ||| | | | ||||||||||||||||||| Sbjct 4521 CGCAAGCCCAGGG-GAGCCCCTATACCCTATAAATAATGCAAACTGGAAATGCTTTTTCC 4579 Query 2485 AAAGGTTGTGGTCACGATTAGACCTAAGTGATCAAGAGGACGAGGGGGACGATGGAGAAC 2544 |||||| |||||| || ||||||||| || |||||| ||| ||| ||||| | Sbjct 4580 AAAGGTCGTGGTCCCGCCTAGACCTAAACAGTCCAGAGGATCAGGAAGACAATGGAAACA 4639 Query 2545 CTGAGAAAGCGTTTAGATGCG 2565 ||| | |||||||||||| Sbjct 4640 CTGGCGAGCCGTTTAGATGCG 4660 Score = 89.7 bits (98), Expect = 3e-14 Identities = 537/848 (63%), Gaps = 43/848 (5%) Strand=Plus/Plus Query 5879 TGTTCCCAAGGTTTCTGCTCATCAGTATAGGGTTTTCCGCGTTTCTCTTCCTGATCCTAA 5938 ||| |||||||| || | | ||||| | || |||| || || || || || || Sbjct 21 TGTACCCAAGGTATCGGGCTACCAGTACCGTGTGTTCCATGTAAAGCTGCCGGACCCCAA 80 Query 5939 TAATTTTGCGTTTACAGAACGCCCCAATC-ATGACCCTGATAAGGAGCGACTGGTGTGGG 5997 ||| |||| || | | | ||| || |||| || || | |||| ||| |||||| Sbjct 81 TAAGTTTG-GTCTGCCTGATGCCAACCTCTATGATCCCGACACCCAGCGTCTGCTGTGGG 139 Query 5998 GCCTCCGT-GGTGTTGATGTTGGCAGAGGACAGCCGATAGGGGTCGGGGTTACGGGTCAT 6056 ||| || || ||||| || || | || ||||| | || || ||| | | ||||| Sbjct 140 -CCTGTGTCGGAGTTGAGGTGGGTCGTGGCCAGCCTCTGGGTGTGGGGATATCCGGTCAC 198 Query 6057 CCTTTATTTAACAGAATGGCTGATAATGAGAATCCTGGTAAGTATGCGGAGACCCCTGCA 6116 |||| | ||||||| ||| ||||| ||| ||| | || | | || || ||| Sbjct 199 CCTTACTATAACAGACTGGATGATACTGAAAATGCACACAA---TCCCGACACAGCTG-- 253 Query 6117 CGTAAGGATTCTCGGCAGAGTGTGGCACTGGACGCTAAGCAGACACAGCTAATGATTGTG 6176 | ||| || ||| | | | |||| ||| ||||||||||| | ||| || Sbjct 254 ----ATGATGGGAGGGAGAATATATCCATGGATTATAAACAGACACAGCTGTTTATTTTG 309 Query 6177 GGTTGTGCACCTGCATTGGGAGAACACTGGGTTAAGGCTGCGGCCTGTAATGGCGCAAAG 6236 || || ||| | | || ||||| ||| |||| | |||| | || || Sbjct 310 GGATGCAAGCCTCCTATAGGTGAACATTGGTCCAAGGGCACTACCTGCAGCGGGTCATCT 369 Query 6237 AAAG---GTGACTGCCCCCCTATTGAGCTTCGAAACACTGTGATACAGGATGGTGACATG 6293 | ||||||| || || || || || |||||| || ||||||| || ||| Sbjct 370 GCTGTTGGTGACTGTCCTCCCCTTCAGTTTACAAACACCACTATTGAGGATGGGGATATG 429 Query 6294 ATGGAAACTGGTTTTGGAGCTATGGATTTTAGGGCCTTGTCTGTT-AATAAGTCTGATGC 6352 | ||||| || || || || |||||||| || | | || || || ||||||| Sbjct 430 GTTGAAACCGGGTTCGGGGCCCTGGATTTTGCCGCTCTA-CAGTCCAACAAATCTGATGT 488 Query 6353 CCCCCTCGATATTGTTATGTCTACC---TGCAAGTATCCGGACTACCTGAAAATGGGTAA 6409 |||||| |||||| || ||| | || || ||||||||||| |||||||||| | Sbjct 489 CCCCCTGGATATTTGTA---CTAACATATGTAAATATCCGGACTATCTGAAAATGGCTGC 545 Query 6410 GGAGGCTAGTGGTGATTCCATGTTCTTTTTTGCACGTCGGGAGCAGGAATATGTCA---G 6466 || | ||| ||||| |||||||||| || |||||||| || | ||| | Sbjct 546 TGACCCCTATGGCGATTCTATGTTCTTTTCCCTGCGCAGGGAGCAG--ATGT-TCACCCG 602 Query 6467 GCATTTCTTCAGTAGGGAAGGTGTGAGTGGGGAATCTGTTCCAAAAGACCTATTTTTCCC 6526 |||||| || | | ||| || || || || | | || | || |||| | || Sbjct 603 GCATTTTTTTAATCGGGGTGGGTCGATGGGTGACGCCCTCCCGGAGGAGCTATATGTCAA 662 Query 6527 TGGTGATGAGGATCAG--GCCCAGAAGTCTATAAGCACACAGGTGTATTTTGGAACACCC 6584 || | | ||| ||| | ||| ||| || || || ||| Sbjct 663 AAGTTCTACCGTCCAGACCCCCGGTAGT-TAT----------GTTTACACCTCCACTCCC 711 Query 6585 AGTGGCTCTTTGACCTCTACTGACTCCCAAATATTTAACAGGCCTTACTGGTTGCAAAGG 6644 ||||||||| || || |||| || ||||||||| |||||||||| ||| |||| Sbjct 712 AGTGGCTCTATGGTATCCTCTGAACAGCAGTTATTTAACAAGCCTTACTGGCTGCGAAGG 771 Query 6645 TCACAAGGACTTAATAATGGCATTTGTTGGCTCAATCAATTGTTTGTTACAGTTGGCGAC 6704 | || |||| ||| |||||||| || ||| ||||| | || | ||||| | ||| Sbjct 772 GCCCAGGGACATAACAATGGCATGTGCTGGGGCAATCGGGTCTTCCTGACAGTGGTGGAC 831 Query 6705 ACCACACG 6712 ||||| || Sbjct 832 ACCACGCG 839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24821718434560