Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq8564 105 9e-18 seq5929 91.5 2e-13 seq532 87.8 2e-12 seq2146 84.2 3e-11 >seq8564 Length=7362 Score = 105 bits (116), Expect = 9e-18 Identities = 188/270 (70%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029 || ||||| || || | |||| | || ||||||| || || || || || || || Sbjct 6941 CTGGACATCTGCTGGTTATTAGTACAGGCGTTAAATAGCGTTGGTGAAGCATGCGTAAAA 6882 Query 70030 CATTTTTCAGA-AAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAAT 70088 || ||| || || || ||||||||||| ||| || || || || || |||||| Sbjct 6881 TATCGTTCGGATAAATAG-TTGTATGTTTCTATAACTTTGTCAATGTCGTTCTCATGAAT 6823 Query 70089 TCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTT 70148 || | || || | ||||||||| || ||||||| ||||| | || ||| ||||| Sbjct 6822 ACCAACAGCTACTCTCATCAACATGTGTTGAGGTCTCTCTACTATCTTGCCATTGATTTT 6763 Query 70149 CAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA--TGAAAAGTCTCTT 70206 || |||||| | | || || || ||||| |||| ||| || || ||||| |||| Sbjct 6762 CAGCAGGTAGCTTCTCTCAAGTGTCTTAAAACCAATATAATTATAACTGAAA--TCTCGA 6705 Query 70207 TCGTAAATAATAACAGAATTTAGTTTATCC 70236 ||||| || ||| |||||| |||| | ||| Sbjct 6704 TCGTATATTATAGCAGAATCTAGTCTTTCC 6675 >seq5929 Length=11024 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 69505 GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA 69564 ||||| ||| || |||||||| |||||||||||| |||| ||||| |||||| ||| Sbjct 296 GTATACAGCTCTTTAAATTCATCACCCCAAACATCAGCCAAGCCAGGGGATTCATACGGA 237 Query 69565 CACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAA 69624 |||||||| ||| | || |||| | || |||| |||||| ||||| || ||||| Sbjct 236 CACATCAAGCTCCAGATTTCGTCATTATATACACGTTCCATAAAAAGATCTGGTATCCAT 177 Query 69625 AGA 69627 ||| Sbjct 176 AGA 174 Score = 89.7 bits (98), Expect = 7e-13 Identities = 256/391 (65%), Gaps = 6/391 (2%) Strand=Plus/Minus Query 69117 ACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAAT 69176 ||| |||||||||||||| | ||| ||| ||| | || ||| |||||| |||| | Sbjct 813 ACCAATAGGTCTATGTCTTTGATTAGAAGTTTTCGTCTCCAAAATGGGATAAAAATTGAC 754 Query 69177 ATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAA 69236 || |||| ||||| | ||| || || | ||| | || || ||||| ||| Sbjct 753 GTCGATAACTTTATCCAAATTACGAGTGACGATTTTTGCAACTGTTTTAAGTTTATCAAA 694 Query 69237 ATCAAA----TCGTCCATC-TATA-ACAAACATATTCAGTGCTACAGATGCTAGATTACA 69290 ||| || | || || ||| ||||||||||| | || | |||||| |||||||| Sbjct 693 ATCGAAAGTCTTGTTATTCGTATTCACAAACATATTGACAGCAATAGATGCCAGATTACA 634 Query 69291 AACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTT 69350 || || || || || | ||||| || | || || || | ||| || ||||| Sbjct 633 CACAGCAACTTCCCCAGGGCCAGAGTATTGAATAACTTCGGTGCACAAATTGCTGCATTT 574 Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 ||| || || | | || |||||| ||| || ||| ||||||||||| || | Sbjct 573 GATTGTACCAATGTGCTGATGATTAGATTTTCGATTGCAGTGATCCTTGTAAAGCATGTA 514 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470 ||||| |||||||| | || ||| || ||| | ||| || |||| || | || Sbjct 513 AGGAGTTCCAGTTTCTACTTGCGATCTGAGAATGGCAACCCACACAGCCCTGGCCTCTAC 454 Query 69471 TACGGTCTTGTAACGCTTCTCTTTTTCATAT 69501 | |||| || || |||||||| ||| Sbjct 453 TTGTTTCTTATAGCGACCTTCTTTTTCGTAT 423 >seq532 Length=46805 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 40114 TACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACG 40173 |||||| || |||||||| |||||| | |||||||||||||||| ||| | |||| | Sbjct 27590 TACTTCCTCTATGGTCCAAAATGACGCCACAGCCTTTTTGTACATGTCCCAGACATCAGG 27531 Query 40174 ATATTGTATTGGAAAAATAACAAATCTATTTGG 40206 |||||| || || ||||| ||||| | |||||| Sbjct 27530 ATATTGAATGGGGAAAATTACAAAGCGATTTGG 27498 >seq2146 Length=24533 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/167 (72%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014 ||||| |||||||| |||| || ||||| ||| ||||| || |||| ||||| || Sbjct 24276 ATATGACTCATAAGGACCTTTCTCGGTAGCTATTTCGCAACTGGCTTCTAGAGCACCATA 24335 Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074 ||||| || || ||||| | ||||||| || |||||| || || ||||| || Sbjct 24336 ATAAAGAGTCTCAAAAATTTGAATATTGAGTTCACTAGCTTCTTTGCTTTCAAATGGGTA 24395 Query 69075 ATGTAA--AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 | | | |||| ||||||||||||| ||||| || || | ||||| Sbjct 24396 -TCTCATTAAGA-TAAATGCATCTGCTAATCCTTGTACACTGATACC 24440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686592787606560