Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_027383.1 Length=44613 Score E Sequences producing significant alignments: (Bits) Value seq680 170 5e-38 >seq680 Length=42727 Score = 170 bits (188), Expect = 5e-38 Identities = 455/694 (66%), Gaps = 26/694 (4%) Strand=Plus/Minus Query 30044 GTTCTCCTCGCGGTTGAACATCTTGTACACCGCGCCCGACGTAAGGTTAACAAACAGGCC 30103 |||| || ||||| |||| | | ||| | |||| ||| | ||| || ||| ||| Sbjct 34030 GTTCAGCTTGCGGTCGAACGTATGGTAAATGATACCCGCCGTCATGTTGACGAACTCGCC 33971 Query 30104 GTTCAGGTACGCATCAATCAGGTTAGCCGGGTACTGACTGCGCAGCGTGTCGATAAAGTC 30163 ||| |||||||| || | || | || ||| || | ||||| | |||| |||| Sbjct 33970 GTTTAGGTACGCCTCTACCAACTCTTTCGAGTATTGTTTTTCGAGCGTCTTGATATAGTC 33911 Query 30164 TGCCGGTAAATGGTGGTTGTCCGTGGTCTTCGCCCGGATCAGGCGCTTCTGGCTACCCTT 30223 | |||| | ||| ||||||| |||||||| ||| || |||||| || Sbjct 33910 TTCCGGCAGATGCGGGTTGTCGCGCGTCTTCGCTTTGATAAGCCGCTTCATCTCGTCCAA 33851 Query 30224 CTCCACCTCGAATATTTGATACATCGCCCGGTAGCCTTCCGGCGTGGACACGATGACAAA 30283 ||| |||| || | |||||||| ||| | ||||| || |||||||| || | | Sbjct 33850 CTCAGTGACGAAGATGCGGTACATCGCGCGGAAACCTTCAGGTGTGGACACAATAATCAT 33791 Query 30284 CTGGCGGACGAAGCCCGCACGCAGACGACCGAGCAATTTGTGGTATGCCGCCAT---TGC 30340 |||||| || || |||||||||||| |||| ||| | | |||||| ||| Sbjct 33790 CTGGCGCACTTTACCGCGACGCAGACGACCCAGCAGTTTCACGAA---CGCCATATATGC 33734 Query 30341 GACGTCTTGTTTCGTGGTGTCGAACTCGTCGGCAACAATCCACGCGGCGTTGACCCCGAT 30400 |||||| | || ||||||||||||||| ||| |||||||||||| || |||| Sbjct 33733 GACGTCCTCCGCCGAGGTGTCGAACTCGTCCATCACACACCACGCGGCGTTAACACCGAC 33674 Query 30401 CAGGCGGGTATAGTTCTCCATTGACTCACAGATAACGCGAGT---CCATTTGC------C 30451 | ||| ||||||| ||||| || ||||||| | || || | |||| Sbjct 33673 TAAGCGTTTATAGTTTTCCATCGATGCACAGATGATACGTGTGCGGCGGTTGCGCTGGAT 33614 Query 30452 TTTC----------ACCAGCACGTTGTAGATCTTGTCCTGCTTATTGAACTTCCACCGTA 30501 |||| |||||||| | | ||||| ||| ||| || ||||| | || | Sbjct 33613 TTTCTCATCCCAAACCCAGCACG-TAAAAATCTTCTCCACCTTGTTAAACTTGTATCGAA 33555 Query 30502 AGCCAGCCTCGTCGAATGCCTTCTCCAGTTCCGGGTACATGATTTTGACCAGGAGTGGAA 30561 ||| ||| || | ||| | || ||||| || || | | | | ||||| Sbjct 33554 TGCCGTACTCATCAAGCGCCGTTTCAAGTTCGGGATAAAGCACCTGCGTTAACAGTGGGT 33495 Query 30562 TAGTCGGTTCGGTCACGATGCCGTCATAACCAGGGTTAAGTGTCAGAAGCTGGATGACCT 30621 ||||||||||| | || ||||| | || || || | ||| |||||||| | | Sbjct 33494 GCGTCGGTTCGGTAATCATACCGTCGCACCCCGGATTCAAAATCATCAGCTGGATCGCTT 33435 Query 30622 TACGTGCGGCAACCCATGACTTGCCACCGCCGAAGCCGGAACACAGGCCGAGGATTTTAG 30681 |||| | || ||||| | || || ||||| |||| || ||||||||||| ||||| | Sbjct 33434 TACGCACCGCGACCCAAGTTTTACCGCCGCCATAGCCCGAGCACAGGCCGAGAATTTTCG 33375 Query 30682 TCTTCGTGTCGCGCAGTAGTTCAACCTGGTGAGG 30715 || | |||| |||||| || | |||||| || Sbjct 33374 TCGTGATGTCTTCCAGTAGGTCGAACTGGTGCGG 33341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142577659544600