Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq13651 145 3e-30 seq35391 93.3 2e-14 >seq13651 Length=3921 Score = 145 bits (160), Expect = 3e-30 Identities = 330/494 (67%), Gaps = 2/494 (0%) Strand=Plus/Minus Query 26214 CTGGCGCTGATTGCCGCAGGTGCTTCTGCGCCTGAAATCCTCGACCAGTTTCTGGATGAA 26273 ||||| ||||| || || || || || || |||| || | ||||||| ||| || Sbjct 3507 CTGGCCCTGATCGCGGCCGGCGCATCGGCTCCTGTCATGATGTCGCAGTTTCAGGAAGAG 3448 Query 26274 AAGGAAGGTAACCACACCACAGCATACCGTGATGGTGCGGGTATCTGGACCATCTGCCGT 26333 || |||||| | | | || ||||||| || |||| || |||||||| || ||| | Sbjct 3447 AAAGAAGGTCAGCGCCTGACCGCATACCAGGACGGTGTTGGAATCTGGACAATTTGCGGC 3388 Query 26334 GGAGCCACCCGGGTGGATGGTAAGCCTGTTATTCCTGGCATGAAGCTGTCGAAGGAAAAA 26393 || | || ||| | || || ||| | || | ||| | || | Sbjct 3387 GGCGTGACGATGGTCAACGGCCAGAAGGTTGTGAAGGGGCAGCGCCTGACCGCCGAGCAG 3328 Query 26394 TGCGACCGGGTTAACGCCATTGAGCGTGATAAGGCGCTGGCATGGGTGGAGAAAAACATC 26453 ||| | | | || |||| |||| | ||||| || | ||||| || ||| || Sbjct 3327 TGCAAGCAGATTGACGCAGCAGAGCAGAAAAAGGCTCTCGACTGGGTAGACCGCAACGTC 3268 Query 26454 AAAGTGCCGCTGACCGAACCCCAGAAAGCGGGGATCGCGTCATTCTGTCCGTACAACATT 26513 || || ||||||||||||| || |||| || ||||| ||||||||||||| ||||| Sbjct 3267 AAGGTAACGCTGACCGAACCTCAAAAAGTTGGTATCGCCTCATTCTGTCCGTGGAACATC 3208 Query 26514 GGTCCCGGTAAGTGTTTCCCGTCGACGTTTTAC-AGACGAATTAATGCAGGTGATCGAAA 26572 || || || || || ||| | || || |||||| ||| | | || || || || || | Sbjct 3207 GGCCCTGGAAAATGCTTCACCTCCACCTTTTACAAGAAG-CTGAACGCCGGCGACCGCAT 3149 Query 26573 AGGTGCCTGCGAAGCTATTCGCTGGTGGATTAAGGACGGTGGCAGAGACTGCCGTATTCG 26632 ||||||||| || || ||| | ||||| | |||| |||| |||| ||||| || || Sbjct 3148 TGGTGCCTGCCGAGAAATCCGCCGCTGGATATACGACGCTGGCCGAGATTGCCGCATCCG 3089 Query 26633 TTCAAACAACTGTTACGGTCAGGTATCCCGTCGTGACCAGGAGAGCGCGCTGGCGTGCTG 26692 || || ||||| ||||| ||| | || || || ||||| || || || ||||| Sbjct 3088 CTCGAATAACTGCTACGGGCAGATCGTACGGCGCGATCAGGAAGCCGAACTAGCTTGCTG 3029 Query 26693 GGGAATCGACAGAT 26706 |||| | |||| || Sbjct 3028 GGGATTGGACAAAT 3015 >seq35391 Length=557 Score = 93.3 bits (102), Expect = 2e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 21679 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 21738 ||||| ||||||||||||| ||||| ||||||||||||||| ||||| ||||||||| Sbjct 191 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGTTGGTTCAAAC 132 Query 21739 CCAGCAAGGGCCACCATAT 21757 ||| || ||||||||| || Sbjct 131 CCAACAGGGGCCACCAAAT 113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184364188861272