Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_027991.1 Length=147303 Score E Sequences producing significant alignments: (Bits) Value seq9536 149 6e-31 seq24957 86.0 6e-12 >seq9536 Length=6390 Score = 149 bits (164), Expect = 6e-31 Identities = 179/240 (75%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 58102 CGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACGCCGCTCAGTTATCTCGATTACGT 58161 |||||| || | ||| |||| ||||| ||||| |||||||| | | | || ||||| || Sbjct 42 CGGCTGCAAGGTGGGCATGGTGTTCAATCCGGCCACGCCGCTTAATCACCTGGATTATGT 101 Query 58162 CATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCAGGCTTCGGCGGCCAGTC 58221 ||||||| ||||| ||||| || ||||||| |||||||| ||||||||||||||| Sbjct 102 GCTGGACAAGCTGGACTTGATCTTGTTGATGTCGGTGAACCCGGGCTTCGGCGGCCAGAA 161 Query 58222 TTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGCGTCGCCGCATTGATGCGTCCGG 58281 || || || | | || ||||| | ||| | ||||| | || || ||||| ||| Sbjct 162 ATTCATCCCCGAAATTCTACATAAAATCCGCCAGGTGCGGCAGCGGATCGATGCCAGCGG 221 Query 58282 TTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGG--TGAACAATATCGGCGAGATC 58339 ||| || || ||||||||||| || ||||| | || || ||||||||||||| ||| Sbjct 222 CCGCGAGATCCGGCTGGAAGTGGATGGTGGCGT-AGGGCCTG-ACAATATCGGCGAAATC 279 >seq24957 Length=1239 Score = 86.0 bits (94), Expect = 6e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 59614 AATGCACCCTTAGTTCAATTGGATAGAGCAACGGTCTTCTAAATCGTTAGTTACAGGTTC 59673 ||||| ||||||| ||| |||||||||||||||| ||||||| ||| || | |||||| Sbjct 509 AATGCGCCCTTAGCTCAGTTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCATAGGTTC 450 Query 59674 GAATCCTGTAGGGTGTACCA 59693 ||||||| ||||| || ||| Sbjct 449 GAATCCTATAGGGCGTGCCA 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471024805301920