Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq19229 663 0.0 seq31064 269 1e-67 seq9276 246 1e-60 seq35391 93.3 2e-14 >seq19229 Length=2166 Score = 663 bits (734), Expect = 0.0 Identities = 809/1088 (74%), Gaps = 29/1088 (3%) Strand=Plus/Plus Query 2456 TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 2515 ||||||||||||| ||| |||||||||||| || | | |||||||||||||||||| Sbjct 419 TGAACCGCCCCGGTTTTTTTGGAGAGTGTTTAGTCCGGAAGCTCAGGCTGCCAGATCATT 478 Query 2516 GTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCCT 2575 ||| ||| |||||||||||||||||| |||||| |||| || | || || |||| Sbjct 479 ATTTGTACTGGTAGCATAATAAGCTTTTTCGGCTTCTACCGGCGGTATGTGTCCTAGCCG 538 Query 2576 TCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTC 2635 | |||| || | ||||||||| ||||||||||||||| ||||| || || |||||||| Sbjct 539 TTCCAGTAACCTTCGATTGTTGAACCAGTCCACCCACGCCAGTGTCGCAAGCTCCACTTC 598 Query 2636 TGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCT 2695 || ||||||||||||| |||||||| || || |||||||||||||| |||||||| || Sbjct 599 CGCGTGGTTTTTCCAGCTTTTACGGTGGATCACTTCCGCTTTGTAAAGGCCATTGATACT 658 Query 2696 CTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTA-ATCCGG 2754 ||| |||| || || || || ||||||||||| || ||||| || |||| | |||| Sbjct 659 CTCGGCCAGGGCATTATCGTAAGAGTCGCCTGTGCTGCCTGTCGACGCCAACAGCTCCGA 718 Query 2755 CTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGAT 2814 | || | | |||| || || ||||||||||| || || ||||| || || ||||| Sbjct 719 C-TCCTGCAACCGCTGGGTGTACGCCAGTGACACGTATTGGGAGCCCTTGTCCGAGTGAT 777 Query 2815 GGATGGTGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATG 2874 |||| || || | |||||||| | ||||| || || || ||||||||||||||||| Sbjct 778 GGATTGTACCTGTGGGACGACGAGACCACAGAGCTTGTTCTAGCGCATCCAGCACGAACC 837 Query 2875 TCGTTTCCATAGACGATGAGACCCGCCACCCCACGAT-GTATCCGGCAAACACATCAATG 2933 | | || ||| ||||||||||||| ||| || ||||| || | ||| |||||||| ||| Sbjct 838 TTGCTTACATCGACGATGAGACCCTCCAGCCAACGATCGTGT-TGGCGAACACATCGATG 896 Query 2934 ATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCAC 2993 || ||||||||||| ||||| |||||| ||||||||||| |||||||| || ||| Sbjct 897 ATGAACGCCACATACGCGAAGGCCTGCCGGGTGCTGACGTACGTAAAATCTGCACACCAA 956 Query 2994 AGCTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCT 3053 ||||| | || |||||||||||||||||||||||||| | || | |||| | | | Sbjct 957 AGCTGATTGGGACGTTCTGCCACGAACTGACGGTTTACCAGATCCGCAGCGGTCGCTGTT 1016 Query 3054 TTCCGGCTGA---TGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGCAAGTCCCATA 3110 || || | || ||||| | ||| ||| || ||||| || || ||| || || Sbjct 1017 TTGCGACCGACTGTGGTCTTGATGAC---TTTGCCGCGGAGTACGCCCCTAAGACCGATT 1073 Query 3111 ACCGCCATGAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTTCCCGTAACAACTGA 3170 | || ||||| | || ||||| | ||| || || | || || || | |||||| Sbjct 1074 ATTTTCAGCAGACGCTCAACCGTACACCGGGCAACGCTAAAACCCTCGCGAAGTAACTGA 1133 Query 3171 CGCCAGACTTTACGCACACCGTACAC-CTGATGATTTTCATCGTATACGCGCTGTATCT- 3228 ||||||||||| ||| | || || || ||| | |||||| ||||| ||||| | ||||| Sbjct 1134 CGCCAGACTTTTCGCGCTCCATAGACACTG-TAATTTTCTTCGTAAACGCGTTTTATCTC 1192 Query 3229 CTCTCTTCAGCCAGTCGTCGTGCTGCGCACGGGCACTGCGTTTATCCGGAT---GATGTC 3285 || || || | || | || | || |||| ||| || |||| | || | Sbjct 1193 CTGGCTGATTTGAG-CATCATACTTTTCTCGTTGGCTGCATTTTTCAGGATGTAGCTGGC 1251 Query 3286 GCTGTTGCTGACAATGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATACCGGTC 3345 | ||||| || || ||| || || |||||||||||| ||| |||| |||||||| | Sbjct 1252 GTTGTTGATGCCA---GTAGTATGTCTACGGGGCAATATCCAGCTCGCGACATACCGGCC 1308 Query 3346 CGACCCC----GTACTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGC 3401 ||||||| |||| ||| ||| | || |||||||| ||||||||||| ||| Sbjct 1309 CGACCCCATGTGTAC----CACTCAGACGTTGCATAAGTGGCATTATTTTTTCCAGTGGC 1364 Query 3402 GGTCGAACTCCGCCTTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGC 3461 | |||| |||||||| |||||||||||| || |||||||| | || || || ||||||| Sbjct 1365 GATCGAGCTCCGCCTGCGCAAAATAAGCAGAGGCCTGGCGCAATATGTCATTGCTGCGGC 1424 Query 3462 GCAGTTCACGATTTTCACGTTCCAGCTCTTTCAGACGCTGACGTTCAGCGCTGGTGAGCC 3521 | || || ||||| ||||||||||| |||| | ||||||||||||| | || | ||| Sbjct 1425 GTAGCTC-CGATTCTCACGTTCCAGTTCTTGTAAACGCTGACGTTCATTGGTGCTCAGCT 1483 Query 3522 CACCATCA 3529 | ||| || Sbjct 1484 CGCCAACA 1491 >seq31064 Length=750 Score = 269 bits (298), Expect = 1e-67 Identities = 485/709 (68%), Gaps = 20/709 (3%) Strand=Plus/Plus Query 2939 CGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGCTG 2998 |||||||||| ||||||||||||| ||||| ||||| |||||||| || ||| ||||| Sbjct 1 CGCCACATAGGCGAAGCCCTGCCAGGTGCTAACGTACGTAAAATCTGCACACCAAAGCTG 60 Query 2999 GTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTTCCG 3058 | || ||||||||||| ||||| |||||||| | || |||| || | | ||| || Sbjct 61 ATTGGGACGTTCTGCCACAAACTGGCGGTTTACCAGATCCGCTGCTGCCGCTGTTTTACG 120 Query 3059 GCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGCAAGTCCCATAACCGCCAT 3118 | ||| || || || ||| || ||||| || || ||| || || | ||| Sbjct 121 ACCGATCGTGGTCTTGATGACTTTGCCACGGAGTACGCCCCGAAGACCTATTATTTTCAT 180 Query 3119 GAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTTCCCGTAACAACTGACGCCAGAC 3178 || ||| | || ||||| | || || || | || || || | ||||||||||||||| Sbjct 181 CAGGCGTTCAACAGTACACCGGGAGACGCTAAAGCCCTCGCGGAGCAACTGACGCCAGAC 240 Query 3179 TTTACGCACACCGTACACCTGATGATTTTCATCGTATACGCGCTGTATCTC-----TCTC 3233 ||| || | || || || | | |||||| |||| ||||| | |||||| | Sbjct 241 TTTTCGTGCTCCATAGACATTGTAATTTTCTCCGTAAACGCGTTTTATCTCCTGGATGGT 300 Query 3234 TTCAGCCAGTCGTCGTGCTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGC 3293 || ||| ||| || | || || | ||| || ||||| | | ||||| Sbjct 301 TTGAGCA-----TCGCACTTTTCTCGTTGGCTACATTTCTCAGGATGTAGCTGGCGTTGC 355 Query 3294 TGACAATGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATACCGGTCCGACCCCG 3353 ||| |||||| || ||||||||||||| || ||||| |||| | || |||| ||| Sbjct 356 TGATGCCAGTAATATGTCGACGGGGCAATATCCAATTCGCGGCATCCTGGCCCGAACCCC 415 Query 3354 TACTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCG 3413 || | ||| || | ||| ||||| |||| |||| |||| || |||||| |||| Sbjct 416 TATTCGCCACTCAAGTCATCAAGCAGCAGCATTATTTCATCCAATGGTGGTCGAGTTCCG 475 Query 3414 CCTTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGAT 3473 ||| |||| ||| || |||| |||||| | ||| ||||| || || ||||| Sbjct 476 CCTGGGCAAGATACGCCGAAGTCTGGCGCAAGATGTCGTTGCTACGTCGCAG-------- 527 Query 3474 TTTCACGTTCCAGCTCTTTCAGACGCTGACGTTCAGCGCTGGTGAGCCCACCATCACCGC 3533 || ||| || |||||||| || ||| | |||||| || || || ||| ||||||||| Sbjct 528 -TTTACGCTCAAGCTCTTTAAGGCGCAGTCGTTCA-CGGGGGGGAATCCAGCATCACCGC 585 Query 3534 CCCCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAA 3593 |||| || ||| |||||||| || | || | ||| ||| | || | || || | Sbjct 586 TACCGGAATTCCGTTCATGCTGACGCAGCCCCGCCTGCAAAGTGTTAGGGCTGCAACCGA 645 Query 3594 TCTTTGGGGCAATGGAACAAATTGCCGCCCACTGTGAGTCATATTCATC 3642 | ||||||||||| || || ||||| || || | |||| |||| Sbjct 646 TTTTTGGGGCAATAGAGAGGATGGCCGCATGCTCAGATTTATATCCATC 694 >seq9276 Length=6644 Score = 246 bits (272), Expect = 1e-60 Identities = 426/617 (69%), Gaps = 14/617 (2%) Strand=Plus/Plus Query 15104 TATCCAGGCGATCGCGACGGGGCCAGTATTTGCTGGCGCGCTTAACAATGGCTTTTCTGG 15163 |||||||||| ||| || |||||||||||||| || ||||| || || | || | | Sbjct 5161 TATCCAGGCGCTCGGCGCGCGGCCAGTATTTGCTTGCCCGCTTGACGATTGTCTTACGCG 5220 Query 15164 CCATTTCATCGGGGAAACTATCCCACGGGCTACTTCCTCCGTTATTTCCGGCTTTGCTGC 15223 ||||||| | ||| | | |||||||| |||| ||| || || ||| Sbjct 5221 CCATTTCCGCCCAGAACGTCTTCCACGGGC---------CGTTCTTT---GCCTTACTGG 5268 Query 15224 ACGCCCTGATGACCTCGATTTCCCTGTTGCTCATCTCTTCGGTCAGATAGTCGCCTTCGG 15283 || | | ||| || || | |||||| || || || ||||| || || |||| Sbjct 5269 TAGCTTCGGTTGCCTTTATCTCTGCGAGGCTCATTTCCTCTGTTAGATAATCTCCGTCGG 5328 Query 15284 ATGTTTTTACGACACAATAACCGCCAA-TGCGTGCGCCCCTGTCGACGAATGGGTTGTAT 15342 || || || || || ||||| | | | | | || | ||| |||| | |||||| Sbjct 5329 GAGTCTTAACAGTGCAGTAGCCGCCGACTACAT-CACCGCGATCGCCGAAAGCGTTGTAC 5387 Query 15343 TTGTGCGTGGGGGCGCAGTCAATACCGTTGGACTCGTAAATGTCCTTCTCGTAAACAAGT 15402 || || || || |||| || | || || || ||||| | || ||| |||||| || Sbjct 5388 TTATGAGTAGGCGCGCTATCCAGTCCATTCGATTCGTAGGTATCGTTCGAGTAAACCAGC 5447 Query 15403 TTGCATTGCCCCCACTGAATGGCTCCTGTGACCTGTGCCAGATGCAGAAGCCCCATATAA 15462 ||||| || ||||||| ||| | || || |||| || ||||| |||||||||||||| Sbjct 5448 TTGCACTGTCCCCACTTAATCGACCCGGTAGCCTGAGCGAGATGAAGAAGCCCCATATAG 5507 Query 15463 CTGATATCCAGGCATACAGCCTTTTTTCGTGGTACCAGATACGCCAGCTTGCTGGCCGGG 15522 ||||| || ||||| || | | ||| || || || || |||||||| ||||| ||| Sbjct 5508 CTGATGTCGAGGCACACCATCCCATCTCGCGGAACGAGGTATGCCAGCTTACTGGCTGGG 5567 Query 15523 TTCAGGGTTATGCCTATGGCGGCAACATTGATGATAGCGTTCTGTGCGCTGGACAGATTT 15582 ||||| |||||||| || || ||||| ||||| || |||||||| ||||| | | |||| Sbjct 5568 TTCAGCGTTATGCCAATTGCCGCAACGTTGATAATCGCGTTCTGCGCGCTTGCCGGATTC 5627 Query 15583 CCCCGTGCTGTGTCAGCCAGAAAGGAATTTTTCTGGAATTGCTGAATTGCAAACTGACTT 15642 || || || | | ||| || ||| |||||||| | || || || ||||| ||| Sbjct 5628 CCGATCGCCGTTTTCGTCAGGAAATCATTCTTCTGGAAAAGTTGCATCGCGAACTGGCTT 5687 Query 15643 TCCTTAGCCCATGTCAGCGTCGGTTCAGTTAATGCTTCGCAGAAAAAGCGCTCCTGCTGT 15702 ||||| |||||||| | | | ||||| | || ||| || || | ||||||||| Sbjct 5688 TCCTTCGCCCATGTAACTGATTGGTCAGTCAGCGCGCCGCTAAATAACGGTTCCTGCTGT 5747 Query 15703 TTAACAAATTCAACGAT 15719 || || ||||||| ||| Sbjct 5748 TTCACGAATTCAATGAT 5764 >seq35391 Length=557 Score = 93.3 bits (102), Expect = 2e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 27123 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 27182 ||||| ||||||||||||| ||||| ||||||||||||||| ||||| ||||||||| Sbjct 191 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGTTGGTTCAAAC 132 Query 27183 CCAGCAAGGGCCACCATAT 27201 ||| || ||||||||| || Sbjct 131 CCAACAGGGGCCACCAAAT 113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203204811833320