Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1592 118 7e-22 seq2779 114 8e-21 seq12857 107 1e-18 >seq1592 Length=29089 Score = 118 bits (130), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||| |||||||||| ||||| ||||| || ||||| || | || || |||||||| Sbjct 661 ACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCGGACAAGGTACGTCCGTCTTCA 720 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || ||||| ||||| || || || ||||| ||||| || || | ||||| ||||| Sbjct 721 AGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCAGGTGGAATACCCTCTTTGTCCTGA 780 Query 34618 ATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||||| |||| || | || ||||| | || ||||| | ||||| ||||| Sbjct 781 ATCTTCGCCTTTA-CGTTCTCGATAGTGTCAGAGGCTTCAACTTCGAGAGTTATAGTTTT 839 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || ||||| || |||||||||||||||||| || Sbjct 840 TCCAGTTAATGTCTTCACAAAAATCTGCATGGTG 873 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||| || ||||| |||||| ||||||||||| || ||||| || Sbjct 187 CCTCCGCGAAGTCGCAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGAC 246 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || |||| || || || || || || || || || | ||| || ||||| || Sbjct 247 AAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGGG 306 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| | ||| || | || || ||| ||| || Sbjct 307 ATGCCTTCTTTGTCT-TGAATTTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCTAC 365 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| || || || ||||| || ||||| ||||| Sbjct 366 TTCCAAAGTAATAGTTTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 413 >seq2779 Length=20704 Score = 114 bits (126), Expect = 8e-21 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||| || || || || || ||||||||||| |||||||| ||| Sbjct 8149 CCTCCGCGAAGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAA 8208 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| || || ||||||||||| || | ||| || || || || || Sbjct 8209 AGAGTTCTGCCATCTTCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGGA 8268 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCCA 34657 | ||| || ||||| ||| ||||| ||| ||| | || |||||| ||| || | Sbjct 8269 ATTCCTTCTTTGTCCTGGAT-TTTTGCTTTTACGTTCTCGATGGTGTCTGAAGCT-TCGA 8326 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||| || || | ||||||||||| |||||||| Sbjct 8327 CTTCAAGAGTAATGGTTTTGCCTGTAAGAGTTTTCACAAAGATCTGCAT 8375 Score = 102 bits (112), Expect = 5e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||| |||| ||| || ||| ||||| || || || ||||| ||| Sbjct 8377 CCTCCACGAAGACGCAGGACCAGATGAAGCGTGGATTCCTTCTGGATATTGTAATCGGAA 8436 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | |||||||||||||| || || || || | |||||| || ||||| || Sbjct 8437 AGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCGAAAATCAGACGCTGCTGATCCGGGGGA 8496 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT-TCGCTCTCCA 34657 | |||||| ||||| ||| ||| | || || | || || ||| ||| || | Sbjct 8497 ATTCCCTCTTTGTCCTGGAT-TTTGGCCTTCACATTTTCTATGGTATCTGAAGCT-TCAA 8554 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || ||||| || || | || || ||||| |||||||| Sbjct 8555 CTTCAAGGGTGATGGTTTTGCCTGTGAGAGTCTTTACAAAGATCTGCAT 8603 >seq12857 Length=4317 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | || || ||||| ||||| ||||| ||||| || ||||| ||| Sbjct 3818 CCACCACGAAGCCTCAGAACTAAATGCAGAGTAGATTCCTTCTGAATATTGTAATCAGAA 3877 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||||||||| || ||||| || || | |||||| ||||| || Sbjct 3878 AGCGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGTTGATCCGGAGGG 3937 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || ||||| ||| ||| | ||| || | |||||| || ||| || Sbjct 3938 ATGCCTTCTTTGTC-CTGAATTTTGGCTTTGACATTTTCAATTGTATCGGATGCCTCGAC 3996 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || |||||||| | || || || ||||||||||| Sbjct 3997 TTCCAATGTGATGGTCTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4044 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || ||||| | ||| ||||| ||||| || ||||| ||||| || || Sbjct 4055 AGACGAAGAACTAAATGTAAAGTTGATTCCTTCTGAATATTGTAATCAGAAAGCGTGCGA 4114 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| |||||||| || ||||| || || | ||| || ||||| || | || ||| Sbjct 4115 CCATCTTCGAGTTGTTTTCCTGCAAAGATCAATCTCTGCTGATCCGGAGGGATACCTTCC 4174 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || ||| ||| | ||| || | || || || ||| ||||||| || Sbjct 4175 TTATCC-TGAATTTTGGCTTTGACATTCTCTATCGTATCAGATGCCTCGACTTCCAATGT 4233 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||||||||| | || || || ||||||||||| Sbjct 4234 GATGGTTTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314588428431332