Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_028492.1 Length=7707 Score E Sequences producing significant alignments: (Bits) Value seq8046 127 1e-25 >seq8046 Length=7925 Score = 127 bits (140), Expect = 1e-25 Identities = 321/478 (67%), Gaps = 10/478 (2%) Strand=Plus/Plus Query 1755 AGACATTACCGGAGAGCAGAGATGAAAAATATGTCTATGTCCCAATGGATAAGAAAGTGT 1814 ||||| ||| | | ||||||| | || | ||| |||| ||| ||||| | | | Sbjct 3967 AGACACTACAAGCGTGCAGAGAGGGAACAAATGAGTATGAGCCAGTGGATCAAATTTAGA 4026 Query 1815 TGCACGGAAGAG-TCGGGGGAGGGGGATTGGAAACCTATATCACTGTATCTTCGGAGTCA 1873 | | | |||| || | ||| || |||||||| |||||| | || | | || ||| Sbjct 4027 GGGA-GCAAGATATCAGAGGAAGGAGATTGGAAGCCTATAGTAAAGTTTTTAAGGCATCA 4085 Query 1874 GGGGGTTGAAGTGGTACGGTTCCTAGGAGCTATGAGGTACTGGTTAAAAGGCATACCGAA 1933 |||||| || | || ||||| | || | | || | |||||||| | || || Sbjct 4086 GGGGGTAGAGTTCGTGTCATTCCTTGCTGCCTTTAAGTCATTTTTAAAAGGTGTGCCCAA 4145 Query 1934 AAAGAACTGCATAGCCATATGTGGGCCCCCAAATACAGGAAAAAGTATGTTT-TGTATGA 1992 ||||| ||||||| | | ||| || || ||||||| ||| || ||| || |||| Sbjct 4146 GAAGAATTGCATAGTGTTTTATGGACCTGCAGATACAGGCAAATC-ATATTTCTGCATGA 4204 Query 1993 GTCTGATCAAATTTCTTAGAGGGCG-TGTACTATCATTTGCAAATAGCAAGAGCCATTTC 2051 |||| | | || || || |||| |||| |||||| ||| ||| || ||||| || Sbjct 4205 GTCTTTTGCAGTTCCT-AGGTGGCGCTGTAATATCATATGCCAATTCCAGTAGCCACTTT 4263 Query 2052 TGGATGCAGCCTCTAGCTGAGGCTAAGATGGTATTATTAGACGATGCAACCAGGGCCAC- 2110 ||| ||||||| ||||||| |||||| | | || | |||||||| || || ||| Sbjct 4264 TGGCTGCAGCCCTTAGCTGACAGTAAGATAGGACTACTGGACGATGCGAC--GGCCCAGT 4321 Query 2111 -CTGGGATTATGTCGACACCTATCTAAGAAATGCGTTGGATGGGAATCCCTTATCTATTG 2169 |||| ||| | || || ||||| || || | ||||| || ||||| ||| | Sbjct 4322 GCTGGACGTATATTGATACATATCTTAGGAACCTACTAGATGGAAACCCCTTCAGTATAG 4381 Query 2170 ACTGTAAATATAGGGCTCCTATGCAGATTAAATGTCCTCCAATTCTCATTACAACTAA 2227 || | ||| ||| | | | ||||||| |||||||||||| | | || ||||| || Sbjct 4382 ACAGGAAACATAAGACCCTGCTGCAGATAAAATGTCCTCCATTAATGATAACAACCAA 4439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24537036354576