Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2779 156 4e-33 seq1592 149 5e-31 seq12857 136 3e-27 >seq2779 Length=20704 Score = 156 bits (172), Expect = 4e-33 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||||| || ||||| | |||||||||||||| ||| | || Sbjct 8375 ATGCAGATCTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTCA 8316 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| |||||| || ||||||||||| || || |||||||| Sbjct 8315 GACACCATCGAGAACGTAAAAGCAAAAATCCAGGACAAAGAAGGAATTCCTCCCGATCAG 8256 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||||| || || ||||||| | || |||||||||| || Sbjct 8255 CAACGTCTCATTTTTGCCGGTAAGCAGCTGGAAGATGGCAGAACTCTTTCCGATTATAAT 8196 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG--TTTGCGGGGTGGC 27215 ||||||||||| || || | || || |||||||| || |||| | ||| Sbjct 8195 ATTCAAAAGGAATCTACACTTCACTTAGTTTTGCGACTTCGCGGAGGGGC 8146 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || |||||||| || || || | || || ||||| || ||| | || Sbjct 8832 CATGCAAATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTTGAGGTAGAAGCTTC 8773 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || ||| || ||||||||||| |||||||| ||||| ||||| Sbjct 8772 TGACACTATAGAGAATGTTAAAGCCAAGATTCAAGACAAGGAAGGCATTCCACCTGATCA 8713 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||||| ||||| ||||||| | || ||||||||||||| Sbjct 8712 GCAGCGCCTGATCTTTGCCGGAAAACAGCTGGAAGATGGCAGAACTCTTTCCGATTACAA 8653 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || || | ||| |||| ||||| | || || || || Sbjct 8652 TATCCAGAAGGAATCCACACTTCATCTGGTCCTGCGTCTTCGTGGAGGAAT 8602 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| ||||| || ||||| | || || |||||||| ||| | || Sbjct 8603 ATGCAGATCTTTGTAAAGACTCTCACAGGCAAAACCATCACCCTTGAAGTTGAAGCTTCA 8544 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||||| || |||||||| || || || || ||||| Sbjct 8543 GATACCATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCAG 8484 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||||||| | ||||| | || ||||||||||||| Sbjct 8483 CAGCGTCTGATTTTCGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGATTACAAT 8424 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || || | ||| |||| ||||| | || || || || Sbjct 8423 ATCCAGAAGGAATCCACGCTTCATCTGGTCCTGCGTCTTCGTGGAGGAAT 8374 >seq1592 Length=29089 Score = 149 bits (164), Expect = 5e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| |||| || || |||||||| | ||||| || | || Sbjct 413 ATGCAAATTTTCGTCAAAACCTTGACGGGAAAAACTATTACTTTGGAAGTAGAGGCTTCA 354 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| |||||| ||||||||||||||||||||||| || || ||||| Sbjct 353 GATACGATCGAGAATGTCAAAGCCAAAATTCAAGACAAAGAAGGCATCCCTCCGGATCAG 294 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||| ||||| || |||| ||| | ||| | ||||||||||| Sbjct 293 CAGAGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAAT 234 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 ||||||||||| || || | ||||| |||||||| Sbjct 233 ATTCAAAAGGAATCCACTCTGCATTTAGTTTTGCG 199 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||| || ||| | || || | || || ||| | || Sbjct 641 ATGCAGATCTTTGTCAAAACCTTGACGGGAAAGACCATCACATTGGAGGTTGAAGCTTCA 582 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| |||||| |||||||| || ||||||||||| || || ||||| Sbjct 581 GACACGATCGAGAATGTCAAAGCGAAAATTCAGGATAAAGAAGGCATCCCCCCAGATCAG 522 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | || || ||||| | |||||| | || ||||||| |||||| Sbjct 521 CAAAGATTGATCTTTGCTGGAAAACAGCTTGAAGACGGCCGCACGCTTTCCGACTACAAC 462 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| || || || |||||| | ||| | || ||||| || Sbjct 461 ATTCAGAAAGAGTCAACTTTGCACTTGGTTCTTCGTCTACGTGGTGGTAT 412 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| || || | || || || |||| ||||| ||||| ||| | | Sbjct 871 CCATGCAGATTTTTGTGAAGACATTAACTGGAAAAACTATAACTCTCGAAGTTGAAGCCT 812 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| | || |||| || || || ||||| |||||||| || || ||||| || | Sbjct 811 CTGACACTATCGAGAACGTAAAGGCGAAGATTCAGGACAAAGAGGGTATTCCACCTGACC 752 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| || || | |||||| ||||| | |||||| | ||| | |||||||||| Sbjct 751 AGCAGCGCTTGATTTTCGCCGGGAAACAGCTTGAAGACGGACGTACCTTGTCCGATTACA 692 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 | ||||| ||||| || || | ||| ||||| Sbjct 691 ATATTCAGAAGGAATCCACTCTCCATCTGGTT 660 Score = 122 bits (134), Expect = 8e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| ||||| || | || || | ||||| || | || Sbjct 185 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAAACCATCACATTGGAAGTCGAGGCATCT 126 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||||| |||||| ||||||||||||||||||||||| || || ||||| Sbjct 125 GATACGATTGAGAATGTCAAAGCCAAAATTCAAGACAAAGAAGGCATTCCTCCGGATCAG 66 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||| ||||| || |||| ||| | ||| | ||||||||||| Sbjct 65 CAGAGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAAT 6 Query 27168 ATTCA 27172 ||||| Sbjct 5 ATTCA 1 >seq12857 Length=4317 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| ||||| ||| | || || | ||||| || | ||| Sbjct 4044 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAGACCATCACATTGGAAGTCGAGGCATCC 3985 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | |||||| |||||||| |||||||||||||| || || |||||| Sbjct 3984 GATACAATTGAAAATGTCAAAGCCAAAATTCAGGACAAAGAAGGCATCCCTCCGGATCAA 3925 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || |||||| | ||||| || || |||| |||||||| Sbjct 3924 CAGAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACGCTTTCTGATTACAAT 3865 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || || | ||||| ||| || | | || ||||| || Sbjct 3864 ATTCAGAAGGAATCTACTCTGCATTTAGTTCTGAGGCTTCGTGGTGGTAT 3815 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||| |||| || || |||| ||| | || || || | || Sbjct 3816 ATGCAAATTTTCGTCAAAACTTTGACAGGAAAAACTATCACTTTGGAGGTAGAGGCTTCG 3757 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || || ||||||||||||||||| ||||| || || ||||| Sbjct 3756 GATACGATCGAGAATGTAAAGGCTAAAATTCAAGACAAAGAGGGCATTCCTCCTGATCAG 3697 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||| ||||| || | || ||| | || | || ||||| || Sbjct 3696 CAAAGACTGATTTTCGCGGGCAAGCAGCTCGAGGACGGACGTACTTTGTCAGATTATAAT 3637 Query 27168 ATTCAAAAGGAGTCGACCTTACAT 27191 ||||| || || || || ||||| Sbjct 3636 ATTCAGAAAGAATCTACACTACAT 3613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434718315790080