Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq19229 663 0.0 seq31064 269 1e-67 seq9276 246 1e-60 seq35391 93.3 2e-14 >seq19229 Length=2166 Score = 663 bits (734), Expect = 0.0 Identities = 809/1088 (74%), Gaps = 29/1088 (3%) Strand=Plus/Plus Query 32904 TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 32963 ||||||||||||| ||| |||||||||||| || | | |||||||||||||||||| Sbjct 419 TGAACCGCCCCGGTTTTTTTGGAGAGTGTTTAGTCCGGAAGCTCAGGCTGCCAGATCATT 478 Query 32964 GTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCCT 33023 ||| ||| |||||||||||||||||| |||||| |||| || | || || |||| Sbjct 479 ATTTGTACTGGTAGCATAATAAGCTTTTTCGGCTTCTACCGGCGGTATGTGTCCTAGCCG 538 Query 33024 TCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTC 33083 | |||| || | ||||||||| ||||||||||||||| ||||| || || |||||||| Sbjct 539 TTCCAGTAACCTTCGATTGTTGAACCAGTCCACCCACGCCAGTGTCGCAAGCTCCACTTC 598 Query 33084 TGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCT 33143 || ||||||||||||| |||||||| || || |||||||||||||| |||||||| || Sbjct 599 CGCGTGGTTTTTCCAGCTTTTACGGTGGATCACTTCCGCTTTGTAAAGGCCATTGATACT 658 Query 33144 CTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTA-ATCCGG 33202 ||| |||| || || || || ||||||||||| || ||||| || |||| | |||| Sbjct 659 CTCGGCCAGGGCATTATCGTAAGAGTCGCCTGTGCTGCCTGTCGACGCCAACAGCTCCGA 718 Query 33203 CTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGAT 33262 | || | | |||| || || ||||||||||| || || ||||| || || ||||| Sbjct 719 C-TCCTGCAACCGCTGGGTGTACGCCAGTGACACGTATTGGGAGCCCTTGTCCGAGTGAT 777 Query 33263 GGATGGTGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATG 33322 |||| || || | |||||||| | ||||| || || || ||||||||||||||||| Sbjct 778 GGATTGTACCTGTGGGACGACGAGACCACAGAGCTTGTTCTAGCGCATCCAGCACGAACC 837 Query 33323 TCGTTTCCATAGACGATGAGACCCGCCACCCCACGAT-GTATCCGGCAAACACATCAATG 33381 | | || ||| ||||||||||||| ||| || ||||| || | ||| |||||||| ||| Sbjct 838 TTGCTTACATCGACGATGAGACCCTCCAGCCAACGATCGTGT-TGGCGAACACATCGATG 896 Query 33382 ATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCAC 33441 || ||||||||||| ||||| |||||| ||||||||||| |||||||| || ||| Sbjct 897 ATGAACGCCACATACGCGAAGGCCTGCCGGGTGCTGACGTACGTAAAATCTGCACACCAA 956 Query 33442 AGCTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCT 33501 ||||| | || |||||||||||||||||||||||||| | || | |||| | | | Sbjct 957 AGCTGATTGGGACGTTCTGCCACGAACTGACGGTTTACCAGATCCGCAGCGGTCGCTGTT 1016 Query 33502 TTCCGGCTGA---TGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGCAAGTCCCATA 33558 || || | || ||||| | ||| ||| || ||||| || || ||| || || Sbjct 1017 TTGCGACCGACTGTGGTCTTGATGAC---TTTGCCGCGGAGTACGCCCCTAAGACCGATT 1073 Query 33559 ACCGCCATGAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTTCCCGTAACAACTGA 33618 | || ||||| | || ||||| | ||| || || | || || || | |||||| Sbjct 1074 ATTTTCAGCAGACGCTCAACCGTACACCGGGCAACGCTAAAACCCTCGCGAAGTAACTGA 1133 Query 33619 CGCCAGACTTTACGCACACCGTACAC-CTGATGATTTTCATCGTATACGCGCTGTATCT- 33676 ||||||||||| ||| | || || || ||| | |||||| ||||| ||||| | ||||| Sbjct 1134 CGCCAGACTTTTCGCGCTCCATAGACACTG-TAATTTTCTTCGTAAACGCGTTTTATCTC 1192 Query 33677 CTCTCTTCAGCCAGTCGTCGTGCTGCGCACGGGCACTGCGTTTATCCGGAT---GATGTC 33733 || || || | || | || | || |||| ||| || |||| | || | Sbjct 1193 CTGGCTGATTTGAG-CATCATACTTTTCTCGTTGGCTGCATTTTTCAGGATGTAGCTGGC 1251 Query 33734 GCTGTTGCTGACAATGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATACCGGTC 33793 | ||||| || || ||| || || |||||||||||| ||| |||| |||||||| | Sbjct 1252 GTTGTTGATGCCA---GTAGTATGTCTACGGGGCAATATCCAGCTCGCGACATACCGGCC 1308 Query 33794 CGACCCC----GTACTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGC 33849 ||||||| |||| ||| ||| | || |||||||| ||||||||||| ||| Sbjct 1309 CGACCCCATGTGTAC----CACTCAGACGTTGCATAAGTGGCATTATTTTTTCCAGTGGC 1364 Query 33850 GGTCGAACTCCGCCTTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGC 33909 | |||| |||||||| |||||||||||| || |||||||| | || || || ||||||| Sbjct 1365 GATCGAGCTCCGCCTGCGCAAAATAAGCAGAGGCCTGGCGCAATATGTCATTGCTGCGGC 1424 Query 33910 GCAGTTCACGATTTTCACGTTCCAGCTCTTTCAGACGCTGACGTTCAGCGCTGGTGAGCC 33969 | || || ||||| ||||||||||| |||| | ||||||||||||| | || | ||| Sbjct 1425 GTAGCTC-CGATTCTCACGTTCCAGTTCTTGTAAACGCTGACGTTCATTGGTGCTCAGCT 1483 Query 33970 CACCATCA 33977 | ||| || Sbjct 1484 CGCCAACA 1491 >seq31064 Length=750 Score = 269 bits (298), Expect = 1e-67 Identities = 485/709 (68%), Gaps = 20/709 (3%) Strand=Plus/Plus Query 33387 CGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGCTG 33446 |||||||||| ||||||||||||| ||||| ||||| |||||||| || ||| ||||| Sbjct 1 CGCCACATAGGCGAAGCCCTGCCAGGTGCTAACGTACGTAAAATCTGCACACCAAAGCTG 60 Query 33447 GTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTTCCG 33506 | || ||||||||||| ||||| |||||||| | || |||| || | | ||| || Sbjct 61 ATTGGGACGTTCTGCCACAAACTGGCGGTTTACCAGATCCGCTGCTGCCGCTGTTTTACG 120 Query 33507 GCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGCAAGTCCCATAACCGCCAT 33566 | ||| || || || ||| || ||||| || || ||| || || | ||| Sbjct 121 ACCGATCGTGGTCTTGATGACTTTGCCACGGAGTACGCCCCGAAGACCTATTATTTTCAT 180 Query 33567 GAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTTCCCGTAACAACTGACGCCAGAC 33626 || ||| | || ||||| | || || || | || || || | ||||||||||||||| Sbjct 181 CAGGCGTTCAACAGTACACCGGGAGACGCTAAAGCCCTCGCGGAGCAACTGACGCCAGAC 240 Query 33627 TTTACGCACACCGTACACCTGATGATTTTCATCGTATACGCGCTGTATCTC-----TCTC 33681 ||| || | || || || | | |||||| |||| ||||| | |||||| | Sbjct 241 TTTTCGTGCTCCATAGACATTGTAATTTTCTCCGTAAACGCGTTTTATCTCCTGGATGGT 300 Query 33682 TTCAGCCAGTCGTCGTGCTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGC 33741 || ||| ||| || | || || | ||| || ||||| | | ||||| Sbjct 301 TTGAGCA-----TCGCACTTTTCTCGTTGGCTACATTTCTCAGGATGTAGCTGGCGTTGC 355 Query 33742 TGACAATGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATACCGGTCCGACCCCG 33801 ||| |||||| || ||||||||||||| || ||||| |||| | || |||| ||| Sbjct 356 TGATGCCAGTAATATGTCGACGGGGCAATATCCAATTCGCGGCATCCTGGCCCGAACCCC 415 Query 33802 TACTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCG 33861 || | ||| || | ||| ||||| |||| |||| |||| || |||||| |||| Sbjct 416 TATTCGCCACTCAAGTCATCAAGCAGCAGCATTATTTCATCCAATGGTGGTCGAGTTCCG 475 Query 33862 CCTTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGAT 33921 ||| |||| ||| || |||| |||||| | ||| ||||| || || ||||| Sbjct 476 CCTGGGCAAGATACGCCGAAGTCTGGCGCAAGATGTCGTTGCTACGTCGCAG-------- 527 Query 33922 TTTCACGTTCCAGCTCTTTCAGACGCTGACGTTCAGCGCTGGTGAGCCCACCATCACCGC 33981 || ||| || |||||||| || ||| | |||||| || || || ||| ||||||||| Sbjct 528 -TTTACGCTCAAGCTCTTTAAGGCGCAGTCGTTCA-CGGGGGGGAATCCAGCATCACCGC 585 Query 33982 CCCCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAA 34041 |||| || ||| |||||||| || | || | ||| ||| | || | || || | Sbjct 586 TACCGGAATTCCGTTCATGCTGACGCAGCCCCGCCTGCAAAGTGTTAGGGCTGCAACCGA 645 Query 34042 TCTTTGGGGCAATGGAACAAATTGCCGCCCACTGTGAGTCATATTCATC 34090 | ||||||||||| || || ||||| || || | |||| |||| Sbjct 646 TTTTTGGGGCAATAGAGAGGATGGCCGCATGCTCAGATTTATATCCATC 694 >seq9276 Length=6644 Score = 246 bits (272), Expect = 1e-60 Identities = 426/617 (69%), Gaps = 14/617 (2%) Strand=Plus/Plus Query 15161 TATCCAGGCGATCGCGACGGGGCCAGTATTTGCTGGCGCGCTTAACAATGGCTTTTCTGG 15220 |||||||||| ||| || |||||||||||||| || ||||| || || | || | | Sbjct 5161 TATCCAGGCGCTCGGCGCGCGGCCAGTATTTGCTTGCCCGCTTGACGATTGTCTTACGCG 5220 Query 15221 CCATTTCATCGGGGAAACTATCCCACGGGCTACTTCCTCCGTTATTTCCGGCTTTGCTGC 15280 ||||||| | ||| | | |||||||| |||| ||| || || ||| Sbjct 5221 CCATTTCCGCCCAGAACGTCTTCCACGGGC---------CGTTCTTT---GCCTTACTGG 5268 Query 15281 ACGCCCTGATGACCTCGATTTCCCTGTTGCTCATCTCTTCGGTCAGATAGTCGCCTTCGG 15340 || | | ||| || || | |||||| || || || ||||| || || |||| Sbjct 5269 TAGCTTCGGTTGCCTTTATCTCTGCGAGGCTCATTTCCTCTGTTAGATAATCTCCGTCGG 5328 Query 15341 ATGTTTTTACGACACAATAACCGCCAA-TGCGTGCGCCCCTGTCGACGAATGGGTTGTAT 15399 || || || || || ||||| | | | | | || | ||| |||| | |||||| Sbjct 5329 GAGTCTTAACAGTGCAGTAGCCGCCGACTACAT-CACCGCGATCGCCGAAAGCGTTGTAC 5387 Query 15400 TTGTGCGTGGGGGCGCAGTCAATACCGTTGGACTCGTAAATGTCCTTCTCGTAAACAAGT 15459 || || || || |||| || | || || || ||||| | || ||| |||||| || Sbjct 5388 TTATGAGTAGGCGCGCTATCCAGTCCATTCGATTCGTAGGTATCGTTCGAGTAAACCAGC 5447 Query 15460 TTGCATTGCCCCCACTGAATGGCTCCTGTGACCTGTGCCAGATGCAGAAGCCCCATATAA 15519 ||||| || ||||||| ||| | || || |||| || ||||| |||||||||||||| Sbjct 5448 TTGCACTGTCCCCACTTAATCGACCCGGTAGCCTGAGCGAGATGAAGAAGCCCCATATAG 5507 Query 15520 CTGATATCCAGGCATACAGCCTTTTTTCGTGGTACCAGATACGCCAGCTTGCTGGCCGGG 15579 ||||| || ||||| || | | ||| || || || || |||||||| ||||| ||| Sbjct 5508 CTGATGTCGAGGCACACCATCCCATCTCGCGGAACGAGGTATGCCAGCTTACTGGCTGGG 5567 Query 15580 TTCAGGGTTATGCCTATGGCGGCAACATTGATGATAGCGTTCTGTGCGCTGGACAGATTT 15639 ||||| |||||||| || || ||||| ||||| || |||||||| ||||| | | |||| Sbjct 5568 TTCAGCGTTATGCCAATTGCCGCAACGTTGATAATCGCGTTCTGCGCGCTTGCCGGATTC 5627 Query 15640 CCCCGTGCTGTGTCAGCCAGAAAGGAATTTTTCTGGAATTGCTGAATTGCAAACTGACTT 15699 || || || | | ||| || ||| |||||||| | || || || ||||| ||| Sbjct 5628 CCGATCGCCGTTTTCGTCAGGAAATCATTCTTCTGGAAAAGTTGCATCGCGAACTGGCTT 5687 Query 15700 TCCTTAGCCCATGTCAGCGTCGGTTCAGTTAATGCTTCGCAGAAAAAGCGCTCCTGCTGT 15759 ||||| |||||||| | | | ||||| | || ||| || || | ||||||||| Sbjct 5688 TCCTTCGCCCATGTAACTGATTGGTCAGTCAGCGCGCCGCTAAATAACGGTTCCTGCTGT 5747 Query 15760 TTAACAAATTCAACGAT 15776 || || ||||||| ||| Sbjct 5748 TTCACGAATTCAATGAT 5764 >seq35391 Length=557 Score = 93.3 bits (102), Expect = 2e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 27183 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 27242 ||||| ||||||||||||| ||||| ||||||||||||||| ||||| ||||||||| Sbjct 191 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGTTGGTTCAAAC 132 Query 27243 CCAGCAAGGGCCACCATAT 27261 ||| || ||||||||| || Sbjct 131 CCAACAGGGGCCACCAAAT 113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210836587073904