Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq13651 268 4e-67 >seq13651 Length=3921 Score = 268 bits (296), Expect = 4e-67 Identities = 607/899 (68%), Gaps = 23/899 (3%) Strand=Plus/Plus Query 45558 TCACCGCACTCCTTGGCCGCCTGTTCCAACAACTGGGCGGTCAGCGCTAGGTTCCTCATG 45617 || |||||||| || || ||||| || | | ||| |||| || || |||| ||||| Sbjct 1139 TCGCCGCACTCTTTCGCGGCCTGCTCGACGATCTGAGCGGCCAATGCGTAGTTCTTCATG 1198 Query 45618 GACTCGGCCTTTTCG--GCCATCCGCCCCAGCGTTCGAAGCCGGAACGCCCGGTTGGCGA 45675 | |||| || || ||||| || | || || |||||| | ||| |||||||| Sbjct 1199 GTTTCGG--TTCGCGTCGCCATGCGATCAAGAACGCGCAGCCGGTAGGCCTTGTTGGCGA 1256 Query 45676 TAGGGATCTCGGACGTCTCT-TCGCGAAAGCGCTTGCGGGTGTCCTCGAACAGAGTCCGC 45734 | || || || || | ||| || ||| |||| || || | |||||| ||| | Sbjct 1257 TCGGAATATCTGAAATTTCTGTCTTGAAT-CGCTCCCGCGTCGTATGGAACAG-GTCTAC 1314 Query 45735 CAGCG-CTTGGCCAGGTCTCGGCCTGC-GCT---CTTGGTCGGATCATGCGACTCGCACT 45789 | | ||| ||||| || | ||| ||| ||| ||||| || || || || || Sbjct 1315 CCACTTCTTAGCCAG----CGACTTGCCGCTAACCTTTGTCGGGTCGTGAGATTCAACCT 1370 Query 45790 GTTGGCGGCTCACCTCTATACCGAATTCTTCTCGGACAGATGCCGCCACCTGTGCGGGGG 45849 | || || | | | || || || |||| | |||| || || | ||| | |||| Sbjct 1371 GCTGACGCGTGATTTTTAGCCCAAACTCTTTTTGGACGGACTCCACGACCAACGTAGGGG 1430 Query 45850 TATCGAAACAGGCCAGGGCCTGCACGATGAAGGCTTTCACCTCATTGTTCAGGACTGCCA 45909 |||| || || || || | ||| | |||||||||||| || || || | | |||| Sbjct 1431 TATCAAAGCACGCAAGCGACTGAATGATGAAGGCTTTTACATCTGGTTTTAATGCAGCCA 1490 Query 45910 TATGGGCTCAC--TCCGTCTTAGCTCTGTCATGGATC-AGGCCGACTTGAGCAGACAGGT 45966 || |||| |||||| | | ||| || | ||| | | |||| ||| | Sbjct 1491 TAAA---TCACCATCCGTCCAATA-CAGTCCAATATTTACGCCAGCCTCAGCATGCAGTT 1546 Query 45967 TCCGCAGGCCCTCGCGATGTTGATCTTTGCCACTTCTGGCGGCTTGCTGGCAGCGTCGAT 46026 ||||| || || || ||||| | | |||||| || | ||| || |||| || || | Sbjct 1547 ACCGCACGCTCTGGCAATGTTTAGTTGTGCCACCTCCGCGGGCCTGTTGGCCGCATCAAC 1606 Query 46027 CATCTCTTGCACTGCCTCACTGGCGCCGTAGCGGCGCACCACCCCGACGAACTCATTCAC 46086 || || || ||| || | |||||||| || ||||| || || || || ||||| | || Sbjct 1607 CAGTTCCTGAACTTCCACGCTGGCGCCATACCGGCGAACTACGCCAACAAACTCTTCAAC 1666 Query 46087 GTCATGCCCGCGCAAGTAGAGGCTCGGCATCCCGTCCGAGCTGAATTTTGGCGCGCCGAA 46146 ||| || ||||||| | || |||| || ||| | ||||||| || |||||||| Sbjct 1667 GTCGTGGCCGCGCAGCTTCAGCACCGGCTGGCCTTCCTTGTTGAATTTCGGTGCGCCGAA 1726 Query 46147 CTCGTCTGTCTTCTGGGCTATGTGAAATAGTTCATGCTCCAAAAGCGAGCAAAACTCCAC 46206 |||||||| ||| || ||||| | || |||||||| | || | ||||||||| | Sbjct 1727 ATCGTCTGTTGCCTGCGCGATGTGGTAAAGCTCATGCTCGATCAGGGCGCAAAACTCAGC 1786 Query 46207 GTCCGAACACTGCGAGCAGTAGTCAGCCGCCAGGGTGATGAGGAAGTCCGGCTCTTCACC 46266 || |||||||| ||||||||||| || ||||| ||||||| ||| | |||| | || || Sbjct 1787 ATCAGAACACTGTGAGCAGTAGTCGGCAGCCAGCGTGATGATGAATTTCGGCACCTCGCC 1846 Query 46267 AAACCATTCACGCATCTGCTGCTCTTGCCGGGCCTTCTGCCAACCTCCAGCGCGGAACAT 46326 ||||| |||| ||||||||| || | |||||||||||| || || || || | | Sbjct 1847 GAACCACTCACACATCTGCTGTTCCATTCTGGCCTTCTGCCAGCCACCGGCACGCATCGC 1906 Query 46327 GACCTGCTCGGCCTGGCCCAGGACATAACGGCCTTGCTTGGTGAATCCAGAGGATGCCCA 46386 |||| || |||||||| || |||| || |||| ||| || | || |||||||| Sbjct 1907 TACCTCTTCAGCCTGGCCGAGCACATGGCGCCCTTTCTTCTCAAACGCGGACGATGCCCA 1966 Query 46387 GAGGACGCGGATGTTCGCGTCGATCAGGTGGGCATGCTCAGGGTTATGGATGCTGCCGG 46445 | | ||| | | ||||| | ||||| | || ||||||||| | |||||||| Sbjct 1967 CATAAAGCGTAGATCGGCGTCTACAAGGTGTCCGTGGTCAGGGTTAAACAGGCTGCCGG 2025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194734054755688