Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq9276 241 5e-59 seq13651 136 2e-27 seq35391 93.3 2e-14 >seq9276 Length=6644 Score = 241 bits (266), Expect = 5e-59 Identities = 426/618 (69%), Gaps = 15/618 (2%) Strand=Plus/Minus Query 22534 ATCGTTGAATTTGTTAAGCAGCAGGAGCGCTTTTTCTGCGAGGCATTAACTGAACCGACG 22593 ||| ||||||| || || |||||||| | || || ||| || | ||||| | | Sbjct 5764 ATCATTGAATTCGTGAAACAGCAGGAACCGTTATTTAGCGGCGCGCTGACTGACCAATCA 5705 Query 22594 CTGACATGGGCGAAGGAAAGTCAGTTTGCAATTCAGCAATTCCAGAAAAATGCCTTTCTG 22653 | ||||||||||||||||| ||||| || || || | |||||||| |||| || ||| Sbjct 5704 GTTACATGGGCGAAGGAAAGCCAGTTCGCGATGCAACTTTTCCAGAAGAATGATTTCCTG 5645 Query 22654 GCTGACACAGCAAGGGCAAATCTGCCCAGCGCACAGAACGCTATCATCAATGTTGCCGCC 22713 | | || || | | |||| | | ||||| |||||||| || ||||| ||||| || Sbjct 5644 ACGAAAACGGCGATCGGGAATCCGGCAAGCGCGCAGAACGCGATTATCAACGTTGCGGCA 5585 Query 22714 ATCGGCATAACCCTGAACCCGGCCAGCAAGCTGGCCGTATCTGGTCCCACGAAAAAAGGC 22773 || |||||||| |||||||| ||||| ||||||| | || || || || ||| | | Sbjct 5584 ATTGGCATAACGCTGAACCCAGCCAGTAAGCTGG-CATACCTCGTTCCGCGAGATGGGAT 5526 Query 22774 TGTATGCCTGGATATCAGTTATATGGGGCTTCTGCATCTGGCACAGGTCACAGGAGCCAT 22833 || ||||| || ||||| |||||||||||||| ||||| || |||| || || | || Sbjct 5525 GGTGTGCCTCGACATCAGCTATATGGGGCTTCTTCATCTCGCTCAGGCTACCGGGTCGAT 5466 Query 22834 TCAGTGGGGGCAATGCAAACTTGTTTACGAGAAGGACATTTACGAGTCCAACGGTATTGA 22893 | ||||||| || ||||| || |||||| ||| || | ||||| || || || | || Sbjct 5465 TAAGTGGGGACAGTGCAAGCTGGTTTACTCGAACGATACCTACGAATCGAATGGACTGGA 5406 Query 22894 CTGCGCCCCCACGCACAAATACAACCCCTTCGTAGACAGGGGCGCACGCA-TTGGCGGTT 22952 |||| || || || || |||||| | |||| || | || | | | | | ||||| | Sbjct 5405 TAGCGCGCCTACTCATAAGTACAACGCTTTCGGCGATCGCGGTG-ATGTAGTCGGCGGCT 5347 Query 22953 ATTGTGTCGTAAAAACATCCGAAGGCGACTATCTGACCGAAGAGATGAGCAACAGGGAAA 23012 | || || || || |||| || || ||||| || || || |||||| | || | Sbjct 5346 ACTGCACTGTTAAGACTCCCGACGGAGATTATCTAACAGAGGAAATGAGCCTCGCAGAGA 5287 Query 23013 TCGAGGTCATCAGGGCGTGCAGCAAAGCCGGAAATAACGGAGGAAGTAGCCCGTGGGATA 23072 | ||| | | || ||| || || ||| |||| |||||||| | | Sbjct 5286 TAAAGGCAACCGAAGCTACCAGTAAGGC---AAAGAACG---------GCCCGTGGAAGA 5239 Query 23073 GTTTCCCCGATGAAATGGCCAGAAAAGCCATTGTTAAGCGCGCCAGCAAATACTGGCCCC 23132 ||| | |||||||| | || | || || ||||| || |||||||||||||| | Sbjct 5238 CGTTCTGGGCGGAAATGGCGCGTAAGACAATCGTCAAGCGGGCAAGCAAATACTGGCCGC 5179 Query 23133 GTCGCGATCGCCTGGATA 23150 | ||| |||||||||| Sbjct 5178 GCGCCGAGCGCCTGGATA 5161 >seq13651 Length=3921 Score = 136 bits (150), Expect = 2e-27 Identities = 177/243 (73%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 4855 TGTCGATACCCCAGCATGCCAGCGCACTCTCCTGGTCGCGACGGGATACCTGACCGTAGC 4914 |||| | |||||||| || || | ||||| ||||| || | ||| ||||||| Sbjct 3018 TGTCCAATCCCCAGCAAGCTAGTTCGGCTTCCTGATCGCGCCGTACGATCTGCCCGTAGC 3077 Query 4915 AATTATTTGAGCGGATACGGCAGTCTCTGCCACCGTCCTTAATCCACCAGCGAATCGCTT 4974 | ||||| |||||||| ||||| |||| |||| |||| | ||||| | ||| || || Sbjct 3078 AGTTATTCGAGCGGATGCGGCAATCTCGGCCAGCGTCGTATATCCAGCGGCGGATTTCTC 3137 Query 4975 CACACGCTCCCCTGCGATCGCCTGCATTAA--TTCGTTTATAAAACGTCGACGGGAAACA 5032 || || || |||| ||||| || || | ||| || ||||| || || | ||| || Sbjct 3138 GGCAGGCACCAATGCGGTCGCCGGCGTTCAGCTTC--TTGTAAAAGGTGGAGGTGAAGCA 3195 Query 5033 CTTACCGGGGCCAATGTTGTAAGGACAGAATGACGCGATCCCCGCTTTCTGAGGTTCGGT 5092 || || ||||| ||||| | ||||||||||| ||||| || |||| ||||||||||| Sbjct 3196 TTTTCCAGGGCCGATGTTCCACGGACAGAATGAGGCGATACCAACTTTTTGAGGTTCGGT 3255 Query 5093 CAG 5095 ||| Sbjct 3256 CAG 3258 >seq35391 Length=557 Score = 93.3 bits (102), Expect = 2e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 10210 ATATGGTGGCCCTTGCTGGATTTGAACCAGCGACCTGGCGATTATGAGTCGCTCGCTCTC 10269 || ||||||||| || ||| ||||||||| ||||| ||||||||||||||| ||||| Sbjct 113 ATTTGGTGGCCCCTGTTGGGTTTGAACCAACGACCAAGCGATTATGAGTCGCCTGCTCTA 172 Query 10270 ACCACTGAGCTAAAGGGCC 10288 ||||||||||||| ||||| Sbjct 173 ACCACTGAGCTAAGGGGCC 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195105092523656