Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq9276 246 1e-60 >seq9276 Length=6644 Score = 246 bits (272), Expect = 1e-60 Identities = 426/617 (69%), Gaps = 14/617 (2%) Strand=Plus/Plus Query 12619 TATCCAGGCGATCGCGACGGGGCCAGTATTTGCTGGCGCGCTTAACAATGGCTTTTCTGG 12678 |||||||||| ||| || |||||||||||||| || ||||| || || | || | | Sbjct 5161 TATCCAGGCGCTCGGCGCGCGGCCAGTATTTGCTTGCCCGCTTGACGATTGTCTTACGCG 5220 Query 12679 CCATTTCATCGGGGAAACTATCCCACGGGCTACTTCCTCCGTTATTTCCGGCTTTGCTGC 12738 ||||||| | ||| | | |||||||| |||| ||| || || ||| Sbjct 5221 CCATTTCCGCCCAGAACGTCTTCCACGGGC---------CGTTCTTT---GCCTTACTGG 5268 Query 12739 ACGCCCTGATGACCTCGATTTCCCTGTTGCTCATCTCTTCGGTCAGATAGTCGCCTTCGG 12798 || | | ||| || || | |||||| || || || ||||| || || |||| Sbjct 5269 TAGCTTCGGTTGCCTTTATCTCTGCGAGGCTCATTTCCTCTGTTAGATAATCTCCGTCGG 5328 Query 12799 ATGTTTTTACGACACAATAACCGCCAA-TGCGTGCGCCCCTGTCTACGAAGGGGTTGTAT 12857 || || || || || ||||| | | | | | || | || |||| | |||||| Sbjct 5329 GAGTCTTAACAGTGCAGTAGCCGCCGACTACAT-CACCGCGATCGCCGAAAGCGTTGTAC 5387 Query 12858 TTGTGCGTGGGGGCGCAGTCAATACCGTTGGACTCGTAAATGTCCTTCTCGTAAACAAGT 12917 || || || || |||| || | || || || ||||| | || ||| |||||| || Sbjct 5388 TTATGAGTAGGCGCGCTATCCAGTCCATTCGATTCGTAGGTATCGTTCGAGTAAACCAGC 5447 Query 12918 TTGCATTGCCCCCACTGAATGGCTCCTGTGACCTGTGCCAGATGCAGAAGCCCCATATAA 12977 ||||| || ||||||| ||| | || || |||| || ||||| |||||||||||||| Sbjct 5448 TTGCACTGTCCCCACTTAATCGACCCGGTAGCCTGAGCGAGATGAAGAAGCCCCATATAG 5507 Query 12978 CTGATATCCAGGCATACAGCCTTTTTTCGTGGGACCAGATACGCCAGCTTGCTGGCCGGG 13037 ||||| || ||||| || | | ||| || || || || |||||||| ||||| ||| Sbjct 5508 CTGATGTCGAGGCACACCATCCCATCTCGCGGAACGAGGTATGCCAGCTTACTGGCTGGG 5567 Query 13038 TTCAGGGTTATGCCGATGGCGGCAACATTGATGATAGCGTTCTGTGCGCTGGGCAGATTT 13097 ||||| |||||||| || || ||||| ||||| || |||||||| ||||| | | |||| Sbjct 5568 TTCAGCGTTATGCCAATTGCCGCAACGTTGATAATCGCGTTCTGCGCGCTTGCCGGATTC 5627 Query 13098 GCCCTTGCTGTGTCAGCCAGAAAGGCATTTTTCTGGAATTGCTGAATTGCAAACTGACTT 13157 | | || || | | ||| || |||| |||||||| | || || || ||||| ||| Sbjct 5628 CCGATCGCCGTTTTCGTCAGGAAATCATTCTTCTGGAAAAGTTGCATCGCGAACTGGCTT 5687 Query 13158 TCCTTCGCCCATGTCAGCGTCGGTTCAGTTAATGCCTCGCAGAAAAAGCGCTCCTGCTGC 13217 |||||||||||||| | | | ||||| | || ||| || || | |||||||| Sbjct 5688 TCCTTCGCCCATGTAACTGATTGGTCAGTCAGCGCGCCGCTAAATAACGGTTCCTGCTGT 5747 Query 13218 TTAACAAATTCAACGAT 13234 || || ||||||| ||| Sbjct 5748 TTCACGAATTCAATGAT 5764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200908242418928