Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq28566 114 3e-21 seq24957 105 2e-18 seq36678 102 2e-17 >seq28566 Length=904 Score = 114 bits (126), Expect = 3e-21 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 35203 TACGAGGCTGCAATGGATGCAGTCAGGGAAGGTTTTGACAGTTCATCAATTAGCCGATGC 35262 || ||||| ||||||||||| || ||||| || ||||| || ||||||||||| |||| Sbjct 4 TATGAGGCAGCAATGGATGCGGTTAGGGAGGGGTTTGATAGCTCATCAATTAGTAGATGT 63 Query 35263 TGCCACGGAGAAAGCGCATATCACAAGGGTAGGTTCTGGAGGTTTGCTGATGAGAGGATG 35322 ||||| ||||||| |||| |||||| || ||||||||| | || || |||||||| Sbjct 64 TGCCATGGAGAAAATGCATCTCACAAAGGAAGGTTCTGGCGATTCGCATATGAGAGGGAA 123 Query 35323 GCCGCATGAAACA 35335 | |||||| ||| Sbjct 124 TCTGCATGACACA 136 >seq24957 Length=1239 Score = 105 bits (116), Expect = 2e-18 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 21138 CTTCTAAGCCGTGGGTCGCAGGTTCGAATCCTGCAGGGCGCGCCATTATATTTCAGCAAG 21197 |||||||||||| |||| ||||||||||||| |||||| ||||||| | ||| || Sbjct 474 CTTCTAAGCCGTAGGTCATAGGTTCGAATCCTATAGGGCGTGCCATTAAGTATCAATGAG 415 Query 21198 TTACCTATNNNNNNNNNNNNNNNNNNNNNNCTGGTGGGACATATTTGGGACATCATCACT 21257 |||| | | ||||||| ||||||||| | | | Sbjct 414 TTACGCCTTTCATCCCGTCTTTCCAATTTCATCATGGGACAGATTTGGGACTAAACCTCC 355 Query 21258 GAAAATCGAGTCAATTTGCTTTGCGTGTTCCGTTAAATGGTTCGGAGCAAGGTGAGCATA 21317 |||||||| ||||||||| | || || || || | ||||||||| |||||||||| || Sbjct 354 GAAAATCGCATCAATTTGCCTCGCATGCTCAGTGAGATGGTTCGGTGCAAGGTGAGTGTA 295 Query 21318 TCGGCGCACCATCTCGATGCTCTCCCATCC 21347 ||| | ||||| || ||||||||||| || Sbjct 294 TCGCTGTACCATTTCTATGCTCTCCCAGCC 265 >seq36678 Length=505 Score = 102 bits (112), Expect = 2e-17 Identities = 125/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 31119 ATGATGCTTGCGGTTCTGGAGTATGGAATCGAAGACGAGGAAATGGCAGAGCTCACCAGG 31178 ||| | || || |||||||||| || || |||||||| |||||||| ||| | | | | Sbjct 354 ATGTTACTGGCCGTTCTGGAGTGGGGTATGGAAGACGAAGAAATGGCGGAGTTGGCTAAG 295 Query 31179 CGACTTGCTACCTACCTGACA---AAAGAAAAAGCCCCGAAGAACGGCGAATTCTTCGAG 31235 || || ||| || ||| || |||||||| |||||| ||| | | | |||||| Sbjct 294 CGCCTGGCTGGATATCTGTCACCAAAAGAAAACGCCCCG--GAA-GTTGCAGCTTTCGAG 238 Query 31236 GCCTGATGTAGAAAGACTGGATCAATCCACAGGAGTAATTATGCCAAA 31283 || |||| ||| ||||||||||| |||||||||||||||| |||| Sbjct 237 GCGTGATTGCGAATTACTGGATCAATTCACAGGAGTAATTATGGCAAA 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132102239802400