Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_028699.1 Length=40740 Score E Sequences producing significant alignments: (Bits) Value seq36678 107 5e-19 seq26876 87.8 5e-13 >seq36678 Length=505 Score = 107 bits (118), Expect = 5e-19 Identities = 116/149 (78%), Gaps = 5/149 (3%) Strand=Plus/Minus Query 30450 GAATTAACTGGATCAATTCACAGGAGTAATTATGGCAAACACTGCCGAAGTAATCAATTT 30509 |||||| |||||||||||||||||||||||||||||||| ||||| || |||||||| || Sbjct 227 GAATTA-CTGGATCAATTCACAGGAGTAATTATGGCAAATACTGCTGAGGTAATCAAATT 169 Query 30510 TCCTGTGCCTG-ACGTGGC-ACCTAAGGAGCCGCGCGTGGCAGATCTCGATGATGGCTAT 30567 ||| || || || |||| | | ||||| | ||||| ||| ||||||| || ||| Sbjct 168 TCCGAAGCTTGAACCTGGCGAGC--AGGAGAGAAGAGTGGCTGATATCGATGACGGATAT 111 Query 30568 ACGCGCCTGGCAAATGAACTTCTGGATGC 30596 || || | || || || || ||||| || Sbjct 110 ACCCGTGTCGCTAACGAGCTGCTGGAAGC 82 >seq26876 Length=1038 Score = 87.8 bits (96), Expect = 5e-13 Identities = 121/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 39001 AAATGAATGA-CAAGACTCCTGAATTCTGGGCTGCGGTTTTGACCGGACTCAAAAATGCG 39059 |||||||||| | ||| |||| ||||||||| | ||| ||| ||| || ||||| || Sbjct 166 AAATGAATGAACGTGAC-CCTGGATTCTGGGCCGACGTTCTGAACGGCCTTAAAAACGCA 108 Query 39060 TGGCCCCAGATACTTGGGGCGTTAATGGCCGGACTCATTGCCTACGGCCGACTGATATAC 39119 ||||| || || ||||| | | |||||||| | ||| ||| |||||| | || ||| Sbjct 107 TGGCCGCAAATTCTTGGTTCTATGATGGCCGGGTTAATTTGCTATGGCCGATTAATTTAC 48 Query 39120 GACGGCGCCACCCGTAAAAATAAATGGCTTGAGGGCGTCCTGTGTGG 39166 || || | || || ||| ||| ||||||||||||| || || Sbjct 47 GATGGTGTAGAGCGAAAGAATCGCTGGATTGAGGGCGTCCTATGGGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130189476136496