Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_028853.1 Length=50078 Score E Sequences producing significant alignments: (Bits) Value seq17748 105 2e-18 >seq17748 Length=2517 Score = 105 bits (116), Expect = 2e-18 Identities = 361/552 (65%), Gaps = 12/552 (2%) Strand=Plus/Minus Query 4025 AAATATCAGCACAGAATCTATTGACGGAGATCAACACCTGATTATCCGCGGCGTTGTGCC 4084 |||||||| || ||| | || ||||| | | ||| | | | |||||| || ||| Sbjct 815 AAATATCACTACCGAAACCATCGACGGGAAACCACATATCGTGGTTCGCGGCATTACGCC 756 Query 4085 GATTGTTGATGATGTTGTGATGAACGACGGACTTTAT--CCTGCGGATGAAATCAATAAA 4142 ||||||| ||| | ||||||||| |||| || | || || | ||||| || Sbjct 755 CGTTGTTGACGATATCGTGATGAAC--CGGAAGTTGTACCCGGCAGCAGAAATTGCCAAG 698 Query 4143 AGCTACAACAGCTTAGAGGGCAACTTTATGCCGCTTGGGCATCCAAAAATCGAAGGTAAA 4202 ||| |||| | | ||| |||| |||||||| |||||||||||||| || || || Sbjct 697 GCCTATAACACCCTTGAGCGCAAACCGATGCCGCTGGGGCATCCAAAAATAGACGGAAAG 638 Query 4203 TACGTTTCAGCCCAAGATGTTCGAGCGGTGAACAAACATCACGTCGGTGCGTGGGCGAAG 4262 | || || || ||||| || ||||||||||| ||||||| || || ||| | Sbjct 637 CATGTATCGGCGGGTGATGTCCGCGCGGTGAACAACTATCACGTTGGCGCCTGGCTTCAA 578 Query 4263 AACGTAC-GCAAGGAAAGTGGCAAAGT-GCTGGTCGATATGTATATCAACCGCCGCTTTG 4320 |||| | ||| | | || || || |||| ||||||||| || ||||||| | || Sbjct 577 GACGTCCAGCATGTTGA-CGGAAAGGTCAATGGT-GATATGTATGTCGACCGCCGTTATG 520 Query 4321 CGGAAGGTTCAGAACAGGGCAAAACCTTGCTTGAACGACTTGACGGAATGGTGACAAACA 4380 | ||||| ||| |||| || || | | ||||| || | |||| | | | Sbjct 519 CCGAAGGCAGTGAAAAGGGTAAGCGGCTGGTAAATCGACTGGATGAAATGATCGCTGGGA 460 Query 4381 CCAACGCTGAACCTATTCACGTTTCCACAGGGCTGATTCTAAACA--AAGTCAAGCAATC 4438 | |||| || || |||||| | ||||| || || || || || | | || | | Sbjct 459 CAAACGTAGAGCCCATTCACATCTCCACCGGACTCCTT-TACTCAGGCATTGCGGCCAAC 401 Query 4439 GGGTAAATCCAAAGGCAAGAAATATAGCTGGATTGCGACAAATATGTCGTTCGATCATAT 4498 || |||| || || ||||| || | | || || ||||| ||| ||| || ||| | Sbjct 400 -GGCGAATCAAAGGGTAAGAAGTACAACGAAATCGCCACAAACATGGTGTTTGACCATGT 342 Query 4499 TGCAATATTGCTTGATGTGCCGGGCGCGGCGACACCTGATGATGGCGTGGGGATTTTTGT 4558 || | | || |||| ||| ||||| | || || || ||||| || || || || Sbjct 341 GGCTGTTCTACTGGATGAGCCTGGCGCCGGAACGCCAAGCGAAGGCGTTGGCATCTTCGT 282 Query 4559 AAACCAAGACGG 4570 ||| ||||| Sbjct 281 TAACGCCGACGG 270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160058016457920