Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_028901.1 Length=43900 Score E Sequences producing significant alignments: (Bits) Value seq680 159 1e-34 >seq680 Length=42727 Score = 159 bits (176), Expect = 1e-34 Identities = 431/660 (65%), Gaps = 26/660 (4%) Strand=Plus/Minus Query 27327 CCCGACGTAAGGTTGACAAACAGGCCGTTCAAGTACGCATCAATCAGGTTAGCCGGGTAT 27386 |||| ||| | |||||| ||| |||||| | |||||| || | || | || |||| Sbjct 33996 CCCGCCGTCATGTTGACGAACTCGCCGTTTAGGTACGCCTCTACCAACTCTTTCGAGTAT 33937 Query 27387 TGGCTGCGCAGCGTGTCGATAAAGTCTGCCGGTAAGTGGTGGTTATCGGTGGTCTTCGCC 27446 || | ||||| | |||| ||||| |||| | || |||| ||| |||||||| Sbjct 33936 TGTTTTTCGAGCGTCTTGATATAGTCTTCCGGCAGATGCGGGTTGTCGCGCGTCTTCGCT 33877 Query 27447 CGGATCAAACGCTTCTGGCTATCCTTCTCCACTTCGAAAATTTGATACATCGCCCGGTAG 27506 ||| | |||||| ||| ||| |||| || | |||||||| ||| | Sbjct 33876 TTGATAAGCCGCTTCATCTCGTCCAACTCAGTGACGAAGATGCGGTACATCGCGCGGAAA 33817 Query 27507 CCTTCAGGCGTTGACACGATGACGAACTGGCGGACGAAGCCAGCACGCAGACGACCGAGC 27566 |||||||| || ||||| || | | |||||| || || |||||||||||| ||| Sbjct 33816 CCTTCAGGTGTGGACACAATAATCATCTGGCGCACTTTACCGCGACGCAGACGACCCAGC 33757 Query 27567 AATTTGTGATATGCCGCCAGCGCGACGTCTTGCTTCGTGGTATCGAACTCGTCGGCAACA 27626 | ||| | ||| |||||||| | | || ||| ||||||||||| ||| Sbjct 33756 AGTTTCACGAACGCCATATATGCGACGTCCTCCGCCGAGGTGTCGAACTCGTCCATCACA 33697 Query 27627 ATCCACGCGGCATTAACCCCGATCAGGCGGGTATAGTTCTCCATTGACTCACAGATAA-- 27684 ||||||||| ||||| |||| | ||| ||||||| ||||| || ||||||| | Sbjct 33696 CACCACGCGGCGTTAACACCGACTAAGCGTTTATAGTTTTCCATCGATGCACAGATGATA 33637 Query 27685 -------CGCGGGTCCATTTGCCTTTCACA----------AGCACGTTATAGATCTTGTC 27727 |||| | | | | |||| || |||||| || | ||||| || Sbjct 33636 CGTGTGCGGCGGTTGCGCTGGATTTTCTCATCCCAAACCCAGCACG-TAAAAATCTTCTC 33578 Query 27728 CTGCTTATTGAACTTCCACCGGAAGCCCGCCTCGTCGAATGCCTTTTCCAATTCCGGATA 27787 | ||| || ||||| | || | ||| ||| || | ||| |||| | ||| ||||| Sbjct 33577 CACCTTGTTAAACTTGTATCGAATGCCGTACTCATCAAGCGCCGTTTCAAGTTCGGGATA 33518 Query 27788 CATGATTT---TAACCAGGAGGGGAATCGTCGGTTCTGTTACGATGCCATCATGACCGGG 27844 | | | | | ||| || | ||||||||| || | || || || || || Sbjct 33517 AAGCACCTGCGTTAACAGTGGGTG---CGTCGGTTCGGTAATCATACCGTCGCACCCCGG 33461 Query 27845 GTTAAGTGTCAGAAGCTGGATTACCTTACGGGCTGCGACCCACGACTTCCCACCACCGAA 27904 || | ||| |||||||| | ||||| | |||||||| | || || || || | Sbjct 33460 ATTCAAAATCATCAGCTGGATCGCTTTACGCACCGCGACCCAAGTTTTACCGCCGCCATA 33401 Query 27905 GCCGGAACACAGGCCGAGGATTTTAGTCTTCGTGTCACGCAGCAGTTCGACCTGGTGCGG 27964 ||| || ||||||||||| ||||| ||| | |||| ||| || |||| ||||||||| Sbjct 33400 GCCCGAGCACAGGCCGAGAATTTTCGTCGTGATGTCTTCCAGTAGGTCGAACTGGTGCGG 33341 Score = 80.6 bits (88), Expect = 7e-11 Identities = 125/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 11477 CCGGCTGAAATAATAGCGCCGCCGATCTCACGCTCGCCCCATAATACACCAAGCGCCGTG 11536 || || || | || ||||||||| || || || ||||| ||| || || || | Sbjct 6490 CCCGCAGATAAAACAGCGCCGCCAATTTCGCGTTCGCCTAATAGGACTGGAATCGGGTTA 6431 Query 11537 CCTTGCGCTGTTGTATTCACTGGCCCGCCGAACGCGTACGACGCTTTGTTATCCACGTCC 11596 ||||| || || |||||||||||| ||||| ||||| | |||||| || |||||| Sbjct 6430 CCTTGTGCCGTAGTATTCACTGGCGGCCCGAATGCGTAGTTTGGTTTGTTCTCGACGTCC 6371 Query 11597 TGCCGGGTCTGCAATCCTTTCGGCTGCGGCGACAGCAATTGCATAGCACCGCCCAGCGC 11655 ||| | ||| |||| ||||||||| | | || ||||| | || |||||||| Sbjct 6370 TGCACACCGTTCAACCCTTGCGGCTGCGGTGCTAACATCTGCATGACGCCACCCAGCGC 6312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140297056712176