Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq34550 178 2e-40 >seq34550 Length=593 Score = 178 bits (196), Expect = 2e-40 Identities = 249/347 (72%), Gaps = 2/347 (1%) Strand=Plus/Minus Query 2193 TTGGTAAGCATCTTGCCGTCCCTCGCTGGCAGGAG-ACATGCGATTATTATAATCAGATG 2251 |||| ||| || |||| |||||||||| || || || ||||||| ||||||||||||| Sbjct 347 TTGGGGAGCGCCTCGCCGCCCCTCGCTGG-AGAAGCACCTGCGATTTTTATAATCAGATG 289 Query 2252 ATGGTACGCGAACGGCTAACGGTTTGCTTCCATGCGCAGTTAAAACAGCGTCACGCAACG 2311 |||| ||||| || || || | || ||||||||||||||||||||||| || || Sbjct 288 ATGGAGCGCGAGCGCCTGACCATCTGTTTCCATGCGCAGTTAAAACAGCGGCATGCTGTT 229 Query 2312 ATGCGTTTTGAAGAAATGAATGATGTCGAACGTGAACGACTGGTATGTGCAATTGATGAA 2371 ||||| || || ||||||||||| ||| || || || || || || || ||||||||| Sbjct 228 ATGCGATTAGAGGAAATGAATGACAGCGAGCGCGAGCGTCTTGTGTGCGCCATTGATGAA 169 Query 2372 TTGCGTGGGGCATTCTCAAAACGCCGTCAGGTTGGCGCAAGTGAGTATGCATATATTAGT 2431 | || | || ||| | | ||| || || ||| | | || || ||| | Sbjct 168 CTTCGCAGCGCTTTCGCTACTTATCGTAAGCACGGTATCAGTAAATCTGGATTCATTGGC 109 Query 2432 TTTTTAACAGTCAGTCAGCGTCGTACTTTATTTATGCATGCCGGATTGACTGAAAAAGAA 2491 |||||| | || || || || |||||||| |||||||||| | ||||| || Sbjct 108 CGATTAACAATAAGCCAACGCCGCACTTTATTCCTGCATGCCGGGCTAACTGAGGTCGAG 49 Query 2492 TTCAACCAGCCATACTGGCGAATTAATGAAGAATCATGTTACTGGCG 2538 || || ||||| |||||||| ||| |||| || || ||| | ||||| Sbjct 48 TTTAATCAGCCGTACTGGCGGATTGATGATGAGTCCTGTAAATGGCG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93395963680152