Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_029066.1 Length=48666 Score E Sequences producing significant alignments: (Bits) Value seq13651 601 1e-167 seq24649 170 6e-38 >seq13651 Length=3921 Score = 601 bits (666), Expect = 1e-167 Identities = 732/992 (74%), Gaps = 7/992 (1%) Strand=Plus/Minus Query 23906 TGGCGCCTGAACAACCTGTATTTCATCACCGACAAGGCAGGCAAGAAGACTCGCTTCCGC 23965 ||||||||||||||||| || ||||| |||||||| | || |||||| | ||| | Sbjct 987 TGGCGCCTGAACAACCTTTACTTCATTACCGACAAATCGGGGAAGAAGGTTAAGTTCAGG 928 Query 23966 ATGACAGCGGAGCAGTTGGAGTATTTCGAAGGCCTGCACACTCGGAACATCATCCTGAAG 24025 ||||| | |||||| | || || ||||||||| | ||||| ||||||| ||||| ||| Sbjct 927 ATGACCCCTGAGCAGCTCGAATACTTCGAAGGCGTACACACCAGGAACATAATCCTAAAG 868 Query 24026 GCACGCCAGCTCGGCTTTACGACTG-AGCAGTGCATCATTCAACTGGACGCGGCGCTGTT 24084 || | ||||||||||||||||| ||| || || | ||||| || || ||| |||| Sbjct 867 GCCAGACAGCTCGGCTTTACGACGCTAGCT-TGTATTGTCCAACTCGATGCCGCGTTGTT 809 Query 24085 CGAGTCGGCCAAGTGCGCGCTGATTGCTCACACCCTGAATGATGCCAAGCGCCTGTTCCG 24144 ||| || ||||| |||||||||||||| |||||| | || || || |||||| |||| | Sbjct 808 CGAATCAGCCAAATGCGCGCTGATTGCCCACACCTTAAACGACGCAAAGCGCTTGTTTAG 749 Query 24145 GGAGAAGATCAAGTTCGCGTACGACAATCTGCCGGCAGAGATCAAGGCGGCCAACCCGGC 24204 ||| ||| |||| | || |||||||| |||||||| ||||| ||| |||||||| Sbjct 748 GGAAAAGGTCAAATATGCCTACGACAACCTGCCGGCGCTGATCAGAAAGGCGAACCCGGC 689 Query 24205 GCGCAACGACGCAGCCGGTGAGCTGGTATTCGCCAAGGGCGGCTCGCTGTATGTCAGCAC 24264 |||||||||| |||||||| || || || |||||||| || || |||||||| Sbjct 688 AAAGAACGACGCAGTTGGTGAGCTTGTTTTTAATAATGGCGGCTCTCTCTACGTCAGCAC 629 Query 24265 GTCATTTCGTGGCGGCACGCTGCGTTACCTGCACGTCTCCGAGTTCGGAAAGATCTGCGC 24324 |||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| Sbjct 628 GTCATTTCGTGGCGGCACGCTGCGTTACCTGCACGTTTCTGAGTTCGGCAAGATCTGCGC 569 Query 24325 CAAGTTTCCGCACAAGGCGCGCGAGATCGTCACTGGTGCGTTTGAGGCGGTGGCTACTGA 24384 |||| ||| ||||||| || || ||||||||||| || |||||||| || | || || Sbjct 568 TAAGTACCCGGACAAGGCCCGTGAAATCGTCACTGGCGCCTTTGAGGCAGTATCGACAGA 509 Query 24385 CTGCTTCGTCACCATCGAATCGACGGCAGAGGGGCGGGCAGGGTACTTCTTCGATTACTC 24444 ||||| || ||||| || || ||||| || || ||||| |||||||| || | Sbjct 508 TTGCTTTACAACTATCGAGAGTACAGCCGAGGGCCGCGCTGGGTATTTCTTCGACTATTG 449 Query 24445 GCAGGCCGCTGAGAAGCAACAGGCCGCAAAGC-AGCCGCTCGGCAAGCTGGACTGGAAGT 24503 ||| | || ||||| ||| || ||| || | || | || || |||||||||| Sbjct 448 CCAGACGGCCGAGAAAGCACA-GCTGCAGGGCAAAACGTTATCAAACCTCGACTGGAAGT 390 Query 24504 TCTTCTTCTTCAGCTGGTGGAAGAATGCCGAGTACTGGCTGGACCCGGCCGGAACGCTCC 24563 | |||||||||| ||||||||||| | |||| | ||||||| | || || Sbjct 389 TTTTCTTCTTCACGTGGTGGAAGAACCCTCAGTATGCAATAGACCCGGTAGAAA---GCC 333 Query 24564 TGCCGCAGCGCCTGACAGATTATTTCGCCGAGCTTGAGGCAAAGCACGGCATCAAGACTA 24623 | || |||| || || || ||| |||||| || || || || ||| ||| | | Sbjct 332 TCCCAGAGCGTCTTGTTGACTACTTCAACGAGCTGGAAGCCAAACATGGCGTCACGCTCA 273 Query 24624 ACGAAGGTCAGCGCGCCTGGTACGCCGCCAAGGAAAAGACCCTCGGCGACGACATGAAGC 24683 | ||| | ||| |||||||| ||| || || ||||| || |||||||||||||||| Sbjct 272 ATGAACGCCAGAAGGCCTGGTATCTCGCTAAAGAGAAGACTCTTGGCGACGACATGAAGC 213 Query 24684 GGGAATACCCGTCGATCCCTGCCGAGGCATTCCAGCAGAGCATCGAGGGCGCCTACTACG 24743 | || || ||| || || || || || ||||| ||| | ||||| || || |||| Sbjct 212 GTGAGTATCCGAGTATACCCGCTGAAGCCTTCCAACAGTCGGTAGAGGGAGCGTATTACG 153 Query 24744 CCAAGCAATTCGCCAAGCTGTACGCACAGCAGCGAATCGGCGTGCTGCCAGATAACAGTC 24803 ||||||||||| | |||||| | | |||| ||||| || || || ||| || Sbjct 152 CCAAGCAATTCCGCTGGCTGTATACCAACAAGCGGATCGGTTCACTTCCCGACAACTCTC 93 Query 24804 ACCAGCCGGTGCACACCTTCTGGGACATCGGCGTGGGCGACTCAACGGCGATCTGGTTCG 24863 ||| ||||| ||||| || ||||| ||||| || || |||||||| || |||||||||| Sbjct 92 ACCTCCCGGTTCACACGTTTTGGGATATCGGTGTAGGTGACTCAACAGCAATCTGGTTCG 33 Query 24864 TTCGGATCGTTGGCGATGAGTTCCACGTCGTC 24895 |||| ||||| || ||| | || ||| || Sbjct 32 TTCGTGAGGTTGGTGAAGAGGTTCATGTCATC 1 >seq24649 Length=1272 Score = 170 bits (188), Expect = 6e-38 Identities = 295/429 (69%), Gaps = 0/429 (0%) Strand=Plus/Minus Query 24874 TGGCGATGAGTTCCACGTCGTCGACTACTACGAGAACAGCGGCGAAGGCCTGCGGCACTA 24933 ||| || ||||| || ||| ||||||||||||||||| ||||| || || ||||||| Sbjct 1272 TGGTGAAGAGTTTCATGTCATCGACTACTACGAGAACTCTGGCGAGGGGTTGAGGCACTA 1213 Query 24934 CATGAAGGTGCTTAAGGAGCGCGGCTACACGTACGGCGACCACTGGGGGCCGCACGACAT 24993 |||||||||| | || || || ||||| ||||||||| ||||||||||| ||||| || Sbjct 1212 CATGAAGGTGTTAAAAGACCGTGGCTATGAGTACGGCGAGCACTGGGGGCCACACGATAT 1153 Query 24994 CGACAACCGCGAGTTCGGTAGCGACGGCAAGACCCGCCGCGAGATCGCAAAGGAAGGCTA 25053 || ||||| ||||| || || | || | || ||| | || || || || Sbjct 1152 TGAAAACCGAGAGTTTGGCTCTGATGCTAAATCACGGAAGGAGCTGGCGCGCGAGGGTTA 1093 Query 25054 CGAGTTCGACGGCCAGCGCTACAGCATCCGCTTCCAGGTGGTGCCGAAGCTGGGCGTAGA 25113 ||| ||||||||||| || || ||| |||| || || || ||||||| || Sbjct 1092 CGAAATCGACGGCCAGGTGTATTCGATGACTTTCAAGGTTGTCCCCAAAGTGGGCGTTGA 1033 Query 25114 CGATGGCATTGATCACGTACGCGAGATCCTTCCCCGCTGCGCCTTCGATGACTCGAAGTG 25173 || || || || || || ||||| || |||| || || || ||| || Sbjct 1032 TACCGGTATCGAGTCTGTCCGTGAAATCCTCCCTAAATGCGTATTTGACGATGAGAAATG 973 Query 25174 TGAGACGGGCATTGCCTGCCTCGAAAACTACCGCAAGGAATGGGACGACAAGCGCGGCTG 25233 || ||| || | ||| || ||||| || || ||||| ||||||||||| || Sbjct 972 TGCTGAGGGGATATCTCACCTTGAGGGATACCGAAAAGAGTGGGATGACAAGCGCGGGTG 913 Query 25234 CTGGAAAGACAAGCCGCTTCACGACTGGTCGTCTCACGGCTCCGACGCATTCCGCTATTT 25293 ||||||||||| || |||||||| | || ||||| || || | |||||||| || Sbjct 912 CTGGAAAGACAGACCTCTTCACGATCACACTTCGCACGGTTCAGATGGTTTCCGCTACTT 853 Query 25294 CGCTGTGGC 25302 || || || Sbjct 852 TGCCGTAGC 844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155541591213344