Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_029073.1 Length=141298 Score E Sequences producing significant alignments: (Bits) Value seq438 230 2e-55 >seq438 Length=50625 Score = 230 bits (254), Expect = 2e-55 Identities = 501/739 (68%), Gaps = 26/739 (4%) Strand=Plus/Minus Query 48753 TCCTAATGGCTGATTCATATCTGTAATGACTGCAATTGTTTTTCGATTCAGATTTTTTCC 48812 ||||||||| | ||||||||| |||| || ||||| ||| ||| | || || Sbjct 16406 TCCTAATGGTTTATTCATATCACTAATAACAGCAATAACCTTTTTATTAAATCCCTTACC 16347 Query 48813 AATATCAACCATTTCTTGTGCTAATGCTTTAGAGTCTTCTAATGTTTTCAT-AAATGCTC 48871 ||||| || |||| | ||||||| | | | |||| |||| | || ||| || | Sbjct 16346 AATATTAATCATTAAGTTTGCTAATTTTCTTGCTTCTT-TAATATCAGCAACAAAAGCAC 16288 Query 48872 CATTTCCTGTTTTAACATCTAATACAATTGCATCTGCTCCCATTGCGAtttttttACTCA 48931 |||| || |||||||||||||| |||| |||||| ||||| || || |||||||||| Sbjct 16287 CATTACCACATTTAACATCTAATAAAATTAAATCTGCACCCATAGCAATCTTTTTACTCA 16228 Query 48932 TAATGCTACTAGCAATTAATGGAATTGAATTAACTGTTCCAGTAACATCGCGTAATGCAT 48991 ||| ||| ||||| ||| | |||||||||||| | | |||||| | ||||||| Sbjct 16227 TAACACTAGCTGCAATCAATTCTAATGAATTAACTGTATCTGAAACATCTCTCAATGCAT 16168 Query 48992 ATAATTTTTTGTCGGCAGGCACTAAAATTCCACTTTGTCC-----AACTAATGCGATTTT 49046 |||||||||| || || || |||||| | || |||| || ||||| | | || Sbjct 16167 ATAATTTTTTATCTGCTGGAACTAAATTATCAGTTTGACCTGTAATACTAAACCCAACTT 16108 Query 49047 ATGTGTATTAACTTGATTAATAAATTGTTCTCTTGTTAATTC-TACGTTAAAGCCTT--G 49103 |||||||| |||||||||| | || |||||| || | ||| || | Sbjct 16107 -----TATTAACTACTTTAATAAATTCAGCAAATGATAATTCATATCTAAAA---TTAGG 16056 Query 49104 TATAGATTCTAATTTGTCAATTGTTCCTCCTGTGTGCCCTAAACCTCTACCTGACATTTT 49163 ||| | | | ||| |||||||| || || || ||||| ||| ||||||| | ||| Sbjct 16055 TATTGTTGAAAGTTTATCAATTGTGCCACCAGTAATGCCTAATCCTTTACCTGAAACTTT 15996 Query 49164 AGCAACAGGAATACCCAAAGAAGCAACCAATGGAGCAACGATTAAACTAATTTTATCGCC 49223 | || | || ||| ||| | || ||| || | |||||| ||||||| || Sbjct 15995 GGTTACTTTTAATCCTAAACTAGCTGCTAAAGGACTAAAAACCAAACTAGTTTTATCACC 15936 Query 49224 GACTCCACCTGTGGAATGTTTATCTACTTTTACACCTTCGATTTTTGATAGGTCAATTGT 49283 | |||||| || ||||| ||||| ||||| | |||| || | || |||| | | Sbjct 15935 AATTCCACCAGTTGAATGCTTATCAACTTTAATTCCTTTAATATCACTTAAATCAAGTAT 15876 Query 49284 TTCACCAGAATTAATCATGGCATTAGTTAAGGCAGAGATTTCTTCTTTAGACATGCCATT 49343 || || |||||||| || || ||||| || || | | |||||| ||| ||| || | Sbjct 15875 TTTTCCTGAATTAATAATTGCTTTAGTAAAAGCTAATAATTCTTCATTATTCATACCTTG 15816 Query 49344 GAAATAAATTGCCATTAACATAGAAGCCATTTGATAATCAGGAATGTCGCCGTTCGTGTA 49403 ||| ||| ||||||| || || |||||||||||||| || || || || || Sbjct 15815 AAAACAAACTGCCATTGCTCAAGCAGTAATTTGATAATCAGGGATTGAACCATT-GT-TA 15758 Query 49404 A--CCGCGGATGATAAAATCAATTTCTTCTT--TTGAAAGCTCATAACCATCCCGTTTTT 49459 | || | | | ||||| | |||||||| || |||||| || || | ||||| Sbjct 15757 AGTCCCTGAACTAAAAAATTTAATTCTTCTTGATTCAAAGCTAAT--CCTTGTTTTTTTT 15700 Query 49460 TCGCAATTAAATCGACCAT 49478 | ||||||||| | ||| Sbjct 15699 TATGAATTAAATCTAGCAT 15681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451817645622720