Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1592 107 1e-18 seq2779 86.0 4e-12 >seq1592 Length=29089 Score = 107 bits (118), Expect = 1e-18 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| | || || ||| |||||| | || || || | Sbjct 413 ATGCAAATTTTCGTCAAAACCTTGACGGGAAAAACTATTACTTTGGAAGTAGAGGCTTCA 354 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| | ||| |||||| ||||| ||||||||||| | || ||| | Sbjct 353 GATACGATCGAGAAT--GTCAAAGCCAAAATTCAAGACAAAGAAGGCATCCCTCCGGATC 296 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | || ||||| || || || || |||| |||| ||||| |||||||||||||| Sbjct 295 AGCAGAGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACA 236 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 | || ||||| || |||| ||||||| |||||||| Sbjct 235 ATATTCAAAAGGAATCCACTCTGCATTTAGTTTTGCG 199 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| || | ||||| ||| ||| || | || || ||| | | Sbjct 869 ATGCAGATTTTTGTGAAGACATTAACTGGAAAAACTATAACTCTCGAAGTTGAAGCCTCT 810 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | | || || || || |||||||| ||| |||| || ||| Sbjct 809 GACACTATCGAGAACGTAAAGGCGAAGATTCAGGACAAAGAGGGTATTCCACCTGACCAG 750 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || || || ||||| ||||| ||||| | || |||| ||| | ||||||||||||||| Sbjct 749 CAGCGCTTGATTTTCGCCGGGAAACAGCTTGAAGACGGACGTACCTTGTCCGATTACAAT 690 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || || |||| | ||| ||||| | | || |||||||| Sbjct 689 ATTCAGAAGGAATCCACTCTCCATCTGGTTCTCAGATTACGTGGCGG 643 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || || ||||| || || ||| || ||| | || ||||| ||| | Sbjct 185 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAAACCATCACATTGGAAGTCGAG-GCATC 127 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||||| | ||| |||||| ||||| ||||||||||| |||| ||| Sbjct 126 TGATACGATTGAGAAT--GTCAAAGCCAAAATTCAAGACAAAGAAGGCATTCCTCCGGAT 69 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| | || ||||| || || || || |||| |||| ||||| ||||||||||||| Sbjct 68 CAGCAGAGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTAC 9 Query 27967 AACATCCA 27974 || || || Sbjct 8 AATATTCA 1 >seq2779 Length=20704 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/224 (69%), Gaps = 16/224 (7%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||||||||||||||| || ||| ||||| |||| |||||| | Sbjct 8376 AATGCAGATCTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTC 8317 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 ||| || |||| || ||| |||||| ||||||||||| |||| Sbjct 8316 AGAC-----ACCATCGAGAACGTAAAAGCAAAAATCCAGGACAAAGAAGGAATTCCTCCC 8262 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCC 27960 || |||||||| | ||||||||||| || || |||| || | |||| || | ||| Sbjct 8261 GATCAGCAACGTCTCATTTTTGCCGGTAAGCAGCTGGAAGATG---GCAGAACTCTTTCC 8205 Query 27961 GATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 ||||| || || ||||| || || | || || |||||||| Sbjct 8204 GATTATAATATTCAAAAGGAATCTACACTTCACTTAGTTTTGCG 8161 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || ||||||||||| ||||||||| || || |||| || ||| | Sbjct 8831 ATGCAAATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTTGAGGTAGAAGCTTCT 8772 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || | || ||| || || ||||| ||||| |||| || ||| Sbjct 8771 GACACTATAGAGAATGTTAAAGCCAAGATTCAAGACAAGGAAGGCATTCCACCTGATCAG 8712 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCGATTAC 27966 || || | || |||||||||||||| |||| || | |||| || | ||||||||| Sbjct 8711 CAGCGCCTGATCTTTGCCGGAAAACAGCTGGAAGATG---GCAGAACTCTTTCCGATTAC 8655 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||| || || ||| | ||| |||| ||||| | ||||| || Sbjct 8654 AATATCCAGAAGGAATCCACACTTCATCTGGTCCTGCGTCTTCGTGGAGG 8605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355702778365308