Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1592 107 2e-18 seq12857 95.1 1e-14 seq2779 93.3 4e-14 >seq1592 Length=29089 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTC 39128 || || || ||||| || ||| || ||||| ||||| ||||||| |||| || ||| | Sbjct 199 CGCAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGACAAG-GTGCGTCC 257 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| |||||||| || || | | |||||| || | || | || ||||| Sbjct 258 GTCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTT 317 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||||| ||||| || | | |||||| | ||| || |||| || || Sbjct 318 GTCTTGAATTTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCTACTTCCAAAGTAAT 377 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||||||||||| ||||| || || |||||||| Sbjct 378 AGTTTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 413 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || || || || |||| ||| || || |||| ||||||||||| || ||||| Sbjct 450 CTCTTTCTGAATGTTGTAGTCGGAAAGCGTGCGGCCGTCTTCAAGCTGTTTTCCAGCAAA 509 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || | | ||||| || | ||| | || ||||| ||| |||||| ||||| | Sbjct 510 GATCAATCTTTGCTGATCTGGGGGGATGCCTTCTTTATCCTGAATTTTCGCTTTGACATT 569 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | ||| || | || || |||| ||||| | |||||||||| ||||| || Sbjct 570 CTCGATCGTGTCTGAAGCTTCAACCTCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGAC 629 Query 39273 AAAGATTTGCAT 39284 |||||| ||||| Sbjct 630 AAAGATCTGCAT 641 >seq12857 Length=4317 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | || | |||||| || ||||| || ||||||||||| | Sbjct 3590 CCGCCTCTAAGACGGAGTACAAGATGTAGTGTAGATTCTTTCTGAATATTATAATCTGAC 3649 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | || ||| |||| || ||||| |||||||| || || || | ||||| || | || Sbjct 3650 AAAGTACGTCCGTCCTCGAGCTGCTTGCCCGCGAAAATCAGTCTTTGCTGATCAGGAGGA 3709 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||||||||| ||||| || | || | | |||||| | ||| || Sbjct 3710 ATGCCCTCTTTGTCTTGAATTTTAGCCTTTACATTCTCGATCGTATCCGAAGCCTCTACC 3769 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| |||||| ||||||| |||| ||||| || || |||||||| Sbjct 3770 TCCAAAGTGATAGTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCAT 3816 >seq2779 Length=20704 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| |||||| || || || ||||| ||||||| ||| |||| | || ||| Sbjct 8395 ACCAGATGAAGCGTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTTCTGCCATCTTCA 8454 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 || |||||||| || || || ||||||||||| || | ||| | | |||||||||| | Sbjct 8455 AGTTGTTTGCCAGCGAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTGTCCTGG 8514 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 ||||| || | | | | ||||| | || || || | ||||| |||| Sbjct 8515 ATTTTGGCCTTCACATTTTCTATGGTATCTGAAGCTTCAACTTCAAGGGTGATGGTTTTG 8574 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || |||||||| ||||| Sbjct 8575 CCTGTGAGAGTCTTTACAAAGATCTGCAT 8603 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || ||||| ||||||||||||| ||| |||| | || || ||||| || || ||||| Sbjct 8185 TCCTTTTGAATATTATAATCGGAAAGAGTTCTGCCATCTTCCAGCTGCTTACCGGCAAAA 8244 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || ||||| ||||| |||| || | | ||||||||| |||||| ||| | || Sbjct 8245 ATGAGACGTTGCTGATCGGGAGGAATTCCTTCTTTGTCCTGGATTTTTGCTTTTACGTTC 8304 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | || || | || || || | || || |||| || || || ||||| ||| Sbjct 8305 TCGATGGTGTCTGAAGCTTCGACTTCAAGAGTAATGGTTTTGCCTGTAAGAGTTTTCACA 8364 Query 39274 AAGATTTGCAT 39284 ||||| ||||| Sbjct 8365 AAGATCTGCAT 8375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429352927858052