Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1592 134 9e-27 seq121 118 7e-22 seq12857 116 3e-21 seq2779 114 9e-21 >seq1592 Length=29089 Score = 134 bits (148), Expect = 9e-27 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| |||||| | ||||||||||| || ||| | ||||| || | | Sbjct 413 ATGCAAATTTTCGTCAAAACCTTGACGGGAAAAACTATTACTTTGGAAGTAGAGGCTTCA 354 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | ||| | |||| || ||||||||||| | || || ||||| Sbjct 353 GATACGATCGAGAATGTCAAAGCCAAAA-TTCAAGACAAAGAAGGCATCCCTCCGGATCA 295 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || ||||| || ||||| |||| |||||| || ||||||||| Sbjct 294 GCAGAGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAA 235 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || ||||| || ||||| | ||||||||||| Sbjct 234 TATTCAAAAGGAATCCACTCTGCATTTAGTTTT 202 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || |||||||| || |||||||||||||| || | Sbjct 869 ATGCAGATTTTTGTGAAGACATTAACTGGAAAAACTATAACTCTCGAAGTTGAAGCCTCT 810 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | |||| || ||| |||||||| ||| | || || || || Sbjct 809 GACACTATCGAGAACGTAAAGGCGAAGATTCAGGACAAAGAGGGTATTCCACCTGACCAG 750 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || || ||||| ||||| || ||||||| ||| || || ||||||||| Sbjct 749 CAGCGCTTGATTTTCGCCGGGAAACAGCTTGAAGACGGACGTACCTTGTCCGATTACAAT 690 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || || ||||| | ||| | ||| | || || || || ||| Sbjct 689 ATTCAGAAGGAATCCACTCTCCATCTGGTTCTCAGATTACGTGGCGGA 642 Score = 107 bits (118), Expect = 1e-18 Identities = 137/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| || ||||| ||||| | ||||| || | | Sbjct 185 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAAACCATCACATTGGAAGTCGAGGCATCT 126 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| | |||| || ||||||||||| | || || ||||| Sbjct 125 GATACGATTGAGAATGTCAAAGCCAAAA-TTCAAGACAAAGAAGGCATTCCTCCGGATCA 67 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || ||||| || ||||| |||| |||||| || ||||||||| Sbjct 66 GCAGAGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAA 7 Query 23790 CATACA 23795 || || Sbjct 6 TATTCA 1 >seq121 Length=74473 Score = 118 bits (130), Expect = 7e-22 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||||||||| || ||||| || |||||||| || || || | Sbjct 8310 ATGCAGATTTTCGTCAAAACCCTCACTGGTAAAACCATTACTCTCGAGGTAGAAGCCTCT 8251 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | ||| || ||| || ||||| || | || |||||||| Sbjct 8250 GATACCATCGAAAATGTGAAAGCCAAGATTCAGGATAAAGAGGGAATTCCACCAGATCAG 8191 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||| || ||||| |||||||| | ||| ||| | ||||| ||| Sbjct 8190 CAGCGACTTATCTTTGCTGGAAAACAGCTGGAAGATGGACGTACTCTCTCTGATTATAAC 8131 Query 23791 ATACAAAAAG 23800 || ||||||| Sbjct 8130 ATCCAAAAAG 8121 >seq12857 Length=4317 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| || || || ||||| | ||||| || | | Sbjct 4044 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAGACCATCACATTGGAAGTCGAGGCATCC 3985 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | ||| |||||| ||||||||||| | || || |||||| Sbjct 3984 GATACAATTGAAAATGTCAAAGCCAAAATTCAGGACAAAGAAGGCATCCCTCCGGATCAA 3925 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || |||||||| ||||| | ||||| | |||||||| Sbjct 3924 CAGAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACGCTTTCTGATTACAAT 3865 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || || | ||||||||| | ||| | || || || Sbjct 3864 ATTCAGAAGGAATCTACTCTGCATTTAGTTCTGAGGCTTCGTGGTGG 3818 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| || ||||| ||||| | ||||| || | | Sbjct 4272 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAAACCATCACATTGGAAGTCGAGGCATCT 4213 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | ||| | |||| || || || |||||| | || || ||||| Sbjct 4212 GATACGATAGAGAATGTCAAAGCCAAAA-TTCAGGATAAGGAAGGTATCCCTCCGGATCA 4154 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || |||||||| ||||| | ||||| | |||||||| Sbjct 4153 GCAGAGATTGATCTTTGCAGGAAAACAACTCGAAGATGGTCGCACGCTTTCTGATTACAA 4094 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || || || || |||||||||||| Sbjct 4093 TATTCAGAAGGAATCAACTTTACATTTAGTT 4063 >seq2779 Length=20704 Score = 114 bits (126), Expect = 9e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || ||||| || || || ||||| || ||||| ||||| || | | Sbjct 8376 AATGCAGATCTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTC 8317 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | ||||| |||||| ||||||||||| | || || ||||| Sbjct 8316 AGACACCATCGAGAACGTAAAAGCAAAAATCCAGGACAAAGAAGGAATTCCTCCCGATCA 8257 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || |||||||| || || |||||||| | | ||| | |||||| || Sbjct 8256 GCAACGTCTCATTTTTGCCGGTAAGCAGCTGGAAGATGGCAGAACTCTTTCCGATTATAA 8197 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || ||||| || || ||| | || |||||||| Sbjct 8196 TATTCAAAAGGAATCTACACTTCACTTAGTTTT 8164 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || || ||||| || ||||| ||||| || |||||||| | | Sbjct 8604 AATGCAGATCTTTGTAAAGACTCTCACAGGCAAAACCATCACCCTTGAAGTTGAAGCTTC 8545 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | || ||||| |||||||| || | || || ||||| Sbjct 8544 AGATACCATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCA 8485 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || ||||||||||| ||||| | | ||| | ||||||||| Sbjct 8484 GCAGCGTCTGATTTTCGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGATTACAA 8425 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 8424 TATCCAGAAGGAATCCAC 8407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337857986216432