Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2779 154 4e-32 seq1592 132 1e-25 seq12857 131 4e-25 seq121 109 1e-18 seq22186 105 2e-17 seq12695 104 6e-17 seq15618 84.2 5e-11 >seq2779 Length=20704 Score = 154 bits (170), Expect = 4e-32 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | |||||| || || || |||||||| || |||| ||||||||||| | ||| Sbjct 8382 ACGAAGACGCAGGACCAGATGAAGCGTGGATTCCTTCTGGATATTGTAATCGGAAAGAGT 8441 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||| || || || |||||||| || || || || || || || ||||| || Sbjct 8442 TCTGCCATCTTCAAGTTGTTTGCCAGCGAAAATCAGACGCTGCTGATCCGGGGGAATTCC 8501 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||| ||||| || ||||||| ||| ||||| ||||| | ||| || || | Sbjct 8502 CTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATGGTATCTGAAGCTTCAACTTCAAG 8561 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || ||||| || | ||| |||| || | |||||| Sbjct 8562 GGTGATGGTTTTGCCTGTGAGAGTCTTTACAAAGATCTGCATT 8604 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | |||||| || || || |||||||| || |||| ||||||||||| | ||| Sbjct 8610 ACGAAGACGCAGGACCAGATGAAGTGTGGATTCCTTCTGGATATTGTAATCGGAAAGAGT 8669 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||| ||||| || || || ||||| || || || || || || ||||| || Sbjct 8670 TCTGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAGGCGCTGCTGATCAGGTGGAATGCC 8729 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| ||||| || ||| || || ||||| || | ||| || || | Sbjct 8730 TTCCTTGTCTTGAATCTTGGCTTTAACATTCTCTATAGTGTCAGAAGCTTCTACCTCAAG 8789 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || || | |||||| | ||| | |||||| Sbjct 8790 GGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATTTGCAT 8831 Score = 147 bits (162), Expect = 5e-30 Identities = 168/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| || || | ||| || || ||||| ||||| | ||| ||||||| | |||| Sbjct 8155 CGAAGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAAAGAGTT 8214 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| |||||||| || || || || || ||||| || ||||| ||||| ||| Sbjct 8215 CTGCCATCTTCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGGAATTCCT 8274 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||| ||||| |||||||| | | |||||||||||||| | ||| || || | Sbjct 8275 TCTTTGTCCTGGAT-TTTTGCTTTTACGTTCTCGATGGTGTCTGAAGCTTCGACTTCAAG 8333 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || ||||| || | |||||| | || | |||||| Sbjct 8334 AGTAATGGTTTTGCCTGTAAGAGTTTTCACAAAGATCTGCATT 8376 >seq1592 Length=29089 Score = 132 bits (146), Expect = 1e-25 Identities = 164/222 (74%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| || || | || ||||||||||| ||||| | ||||||||||| ||| || Sbjct 193 CGAAGTCGCAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGACAAGGTG 252 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || ||||| || | || || || || || || || ||| Sbjct 253 CGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGGGATGCCT 312 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || |||||||| || ||| || || ||| ||||| || ||||| | || || || || Sbjct 313 TCTTTGTCTTGAAT-TTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCTACTTCCAA 371 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || |||||||| ||||| | ||| | |||||| Sbjct 372 AGTAATAGTTTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 413 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| | ||| || || || |||||||||||||| || || | ||||||||||| ||| || Sbjct 648 ACGTAATCTGAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCGGACAAGGT 707 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| ||||| ||||| ||||| || | || || ||||| || |||||||| Sbjct 708 ACGTCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCAGGTGGAATACC 767 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||| || ||||| ||| || ||||| ||||| |||| ||| || || | Sbjct 768 CTCTTTGTCCTGAATCTTCGCCTTTACGTTCTCGATAGTGTCAGAGGCTTCAACTTCGAG 827 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || || || || || || || || Sbjct 828 AGTTATAGTTTTTCCAGTTAATGTCTT 854 Score = 86.0 bits (94), Expect = 1e-11 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593 ||||||||||| ||| || | || || || |||||||| || ||||| || | || || Sbjct 6 ATTGTAATCGGACAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTG 65 Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGT 225652 || || || ||||| ||||| |||||||| || ||| || || ||| || || || | Sbjct 66 CTGATCCGGAGGAATGCCTTCTTTGTCTTGAAT-TTTGGCTTTGACATTCTCAATCGTAT 124 Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712 | || | || || || || ||||| || || || || | ||| || | ||| | |||| Sbjct 125 CAGATGCCTCGACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAATCTGCA 184 Query 225713 T 225713 | Sbjct 185 T 185 >seq12857 Length=4317 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| || || || |||||||| || | ||| ||||| | |||||| | || || Sbjct 3605 AGTACAAGATGTAGTGTAGATTCTTTCTGAATATTATAATCTGACAAAGTACGTCCGTCC 3664 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || |||| ||| || || || ||||| || || |||||| Sbjct 3665 TCGAGCTGCTTGCCCGCGAAAATCAGTCTTTGCTGATCAGGAGGAATGCCCTCTTTGTCT 3724 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||| ||| ||||| || || || | || || || || ||||| || Sbjct 3725 TGAATTTTAGCCTTTACATTCTCGATCGTATCCGAAGCCTCTACCTCCAAAGTGATAGTT 3784 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||||||||| | ||| | |||||| Sbjct 3785 TTTCCTGTCAAAGTTTTGACGAAAATTTGCAT 3816 >seq121 Length=74473 Score = 109 bits (120), Expect = 1e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 ||||||||| || ||||| | | ||| | |||||||| ||||| || ||||| |||| Sbjct 8121 CTTTTTGGATGTTATAATCAGAGAGAGTACGTCCATCTTCCAGCTGTTTTCCAGCAAAGA 8180 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 ||||||| || || || || ||||| || || || || || ||||| |||||| || Sbjct 8181 TAAGTCGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGAATCTTGGCTTTCACATTTT 8240 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 ||||||| || |||| ||| || || | || || || || || || | ||||| | || Sbjct 8241 CGATGGTATCAGAGGCTTCTACCTCGAGAGTAATGGTTTTACCAGTGAGGGTTTTGACGA 8300 Query 225704 ACACTTGCAT 225713 | | ||||| Sbjct 8301 AAATCTGCAT 8310 >seq22186 Length=1599 Score = 105 bits (116), Expect = 2e-17 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| ||||||| |||||| | ||||||||| | |||||||| || |||||||| Sbjct 591 TTCAGGATGTCCAAAAAGTCAGAAAAGATGTTGATATAAAATAGGATCTCCGCCGCCTGA 532 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 |||||||||||| |||||||| || | |||||||||| Sbjct 531 TGGATCAAAAAATGAAGTATTAAGGTTACGGTCAGTTAAAA 491 >seq12695 Length=4408 Score = 104 bits (114), Expect = 6e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || ||||| || |||||||| || ||||| |||||||||||||| || |||||||| Sbjct 2231 GAAAATCTGACCGTCGGTAATAGAAATGACATTCGTAGGGATATAAGCGGACACATCACC 2172 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | || || || ||||| | ||||||||||| || ||| ||| Sbjct 2171 GGCTTGCGTTTCAATGACGGGCAAAGCTGTCAACGATCCACCACCCAACGTTTCATT 2115 >seq15618 Length=3169 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || |||||||||||||| | |||||| || | |||||||| || || || || Sbjct 2579 TTCAGGGTGGCCAAAAAATCAGAAGAGATGTTGGTATAAAATAGGATCACCACCACCAGA 2638 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 ||| |||||||| |||||||| || | ||||||| || Sbjct 2639 TGGGTCAAAAAATGAAGTATTAAGGTTACGGTCAGTTAGAA 2679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191968860421976