Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_030800.1 Length=7277 Score E Sequences producing significant alignments: (Bits) Value seq8046 129 3e-26 >seq8046 Length=7925 Score = 129 bits (142), Expect = 3e-26 Identities = 421/637 (66%), Gaps = 14/637 (2%) Strand=Plus/Plus Query 1612 ATGGTGCAATGGGCATATGATCATGA-ATATTTGGATGA-AGCACAAATTGCATATCAGT 1669 |||||||| | |||||||| ||||| ||| ||| || ||| || | |||| | ||| Sbjct 3817 ATGGTGCAGTACGCATATGACCATGACATAAC-GGACGAGAGCGCAC-TGGCATTTGAGT 3874 Query 1670 ATGCCCGTTTGGCCAATGAGGACTACAATGCTGCAGCTTTTCTTAATTGTAACAATCAGG 1729 | || | |||| | | |||| |||||| ||||| ||||| || | ||| |||| Sbjct 3875 ACGCACAGCTGGCGGACGTGGACGCCAATGCGGCAGCATTTCTAAACAGCAACTGCCAGG 3934 Query 1730 TTAAGCACGTGAAAGAAT--GTGCACAAATGGTTAAGTACTATAAAACTGCAGAAATGAG 1787 ||| || | ||||| ||| |||| || | |||| || |||||| | | Sbjct 3935 CCAAGTACCTAAAAGACGCGGTG-ACAA-TGTGCAGACACTACAAGCGTGCAGAGAGGGA 3992 Query 1788 AGATATGTCTATGGGGCAGTGGATTAAGAAATGTCAGGATAAAG-TAGAAGGAGATGGTG 1846 | | ||| |||| | |||||||| || | | ||| ||| || || || || | Sbjct 3993 ACAAATGAGTATGAGCCAGTGGATCAA-ATTTAGAGGGAGCAAGATATCAGAGGAAGGAG 4051 Query 1847 ATTGGAAGGAAATAGTGAAGTTTTTGAAATTTCAGGGAATTAACATGCTTTCTTTCCTAG 1906 |||||||| ||||| |||||||| | |||||| | | | | || ||||| | Sbjct 4052 ATTGGAAGCCTATAGTAAAGTTTTTAAGGCATCAGGGGGTAGAGTTCGTGTCATTCCTTG 4111 Query 1907 CTGCTATGAAGGACTTTTTGCAGGGTGTACCCaaaaaaaaCTGCATTGTGATATTTGGGC 1966 |||| | ||| ||||| | ||||| ||||| || || ||||| ||| | | ||| | Sbjct 4112 CTGCCTTTAAGTCATTTTTAAAAGGTGTGCCCAAGAAGAATTGCATAGTGTTTTATGGAC 4171 Query 1967 CGCCCAATACAGGCAAATCTATGTTTGTG-ATGAGCTTTATGAAGTTTATGCATGGCAAA 2025 | | ||||||||||||| || ||| || ||||| || || |||| | |||| Sbjct 4172 CTGCAGATACAGGCAAATC-ATATTTCTGCATGAGTCTTTTGCAGTTCCTAGGTGGCGCT 4230 Query 2026 GTTATTTCTTTTGTCAATAGCAGAAGCCATTTCTGGCTACAGCCTTTAGCTTATGCTAAG 2085 || || || | || |||| ||| ||||| || ||||| ||||| |||||| | |||| Sbjct 4231 GTAATATCATATGCCAATTCCAGTAGCCACTTTTGGCTGCAGCCCTTAGCTGACAGTAAG 4290 Query 2086 CTTGCAGTTTTAGATGATGCCACATCTCAAACCTGGCTGTACTTTGATCAATACCTAAGA 2145 | | | | | || ||||| || | || |||| ||| ||||| ||| || || Sbjct 4291 ATAGGACTACTGGACGATGCGACGGCCCAGTGCTGGACGTATATTGATACATATCTTAGG 4350 Query 2146 AATGGATTGGATGGCAATCCAGTGTCTTTGGATTGCAAACATAGAGCACCCAC-ACAAAT 2204 || | | ||||| || || | | | || | ||||||| || || | || || Sbjct 4351 AACCTACTAGATGGAAACCCCTTCAGTATAGACAGGAAACATA-AGACCCTGCTGCAGAT 4409 Query 2205 TAATTTTCCCCCTTTAATGATGACTACTAACATAGAT 2241 || | ||| || |||||||| || || |||||| || Sbjct 4410 AAAATGTCCTCCATTAATGATAACAACCAACATAAAT 4446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23161606080496