Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq35768 123 3e-23 seq24957 122 9e-23 >seq35768 Length=540 Score = 123 bits (136), Expect = 3e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 52708 TACATAGCTTCAGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAG 52767 ||||| | || ||| || ||||||| ||| || || ||||||| ||||||||||| ||| Sbjct 395 TACATCGTTTGAGTGAAGGTACGAGTAATGACGTCCTGCTGTTGCTCTTTGGTCAGCGAG 454 Query 52768 TTAAAGCGAACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCT 52827 || ||||| || || ||||| || || ||||| |||| ||| |||||||| ||| | | Sbjct 455 TTGAAGCGCACGGCGTAACCGGAGACGCGGATGGTCAGCTGAGGGTATTTCTCAGGATTT 514 Query 52828 TCCATCGCTTCAAGCAACATTTCACG 52853 |||||||| || |||| |||||| || Sbjct 515 TCCATCGCGTCCAGCAGCATTTCGCG 540 >seq24957 Length=1239 Score = 122 bits (134), Expect = 9e-23 Identities = 76/82 (93%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 66401 AATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTAT 66460 |||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 428 AATGGCACGCCCTATAGGATTCGAACCTATGACCTACGGCTTAGAAGGCCGTTGCTCTAT 487 Query 66461 CCAGCTGAGCTAAGAGTGCATT 66482 ||| |||||||||| | ||||| Sbjct 488 CCAACTGAGCTAAGGGCGCATT 509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521875000902240