Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq8564 131 2e-25 seq532 113 6e-20 seq5929 109 8e-19 seq2380 100 4e-16 >seq8564 Length=7362 Score = 131 bits (144), Expect = 2e-25 Identities = 190/264 (72%), Gaps = 6/264 (2%) Strand=Plus/Minus Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 || ||||| || || | | ||| | || ||||||| || || || ||||||||||| Sbjct 6941 CTGGACATCTGCTGGTTATTAGTACAGGCGTTAAATAGCGTTGGTGAAGCATGCGTAAAA 6882 Query 78438 CATTTTTCAGA-AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAAT 78496 || ||| || || ||| ||||||||||| ||| || || ||||| | |||||| Sbjct 6881 TATCGTTCGGATAAATAG-TTGTATGTTTCTATAACTTTGTCAATGTCGTTCTCATGAAT 6823 Query 78497 TCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTT 78556 || || ||||| | ||||||||| || |||||||| || || |||| ||| ||||| Sbjct 6822 ACCAACAGCTACTCTCATCAACATGTGTTGAGGTCTCTCTACTATCTTGCCATTGATTTT 6763 Query 78557 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTC 78614 || || ||| | | || | || |||||||||| ||| || || ||||| |||| Sbjct 6762 CAGCAGGTAGCTTCTCTCAAGTGTCTTAAAACCAATATAATTATAACTGAAA--TCTCGA 6705 Query 78615 TCGTAAATAATAACAGAATTTAGT 78638 ||||| || ||| |||||| |||| Sbjct 6704 TCGTATATTATAGCAGAATCTAGT 6681 >seq532 Length=46805 Score = 113 bits (124), Expect = 6e-20 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 48431 ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTC 48490 |||||| || || ||||||||||| || || ||||| || ||||| ||||| | ||||| Sbjct 27903 ATACATCTCAGAATGAATATTTTCTATGGCGATCTGGAAGCCGTAGAAACAACGTGCTTC 27844 Query 48491 TGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACT 48550 | ||| | ||||| || |||| ||| || ||||||||| || |||||||| Sbjct 27843 CGCGATTTTCACCTCTTGACTGAATCTCTCAATCAGATTCTCATTAACGATTCCATCGGA 27784 Query 48551 AGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTT 48607 ||||||||| || || || ||||| ||||| ||| |||||| ||| | ||||| Sbjct 27783 AGCAGCAAAGAACGCCAAGACATGAGAGATAAAGTATCTTTCGTCAGAATTAAGTTT 27727 >seq5929 Length=11024 Score = 109 bits (120), Expect = 8e-19 Identities = 229/334 (69%), Gaps = 8/334 (2%) Strand=Plus/Minus Query 77525 ACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAAT 77584 |||||||||||||||||| | ||| ||| |||| | || ||| |||||| |||| | Sbjct 813 ACCAATAGGTCTATGTCTTTGATTAGAAGTTTTCGTCTCCAAAATGGGATAAAAATTGAC 754 Query 77585 GTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAA 77644 ||| |||| ||||| | ||| | | || | ||| | || || |||||| ||| Sbjct 753 GTCGATAACTTTATCCAAATTACGAGTGACGATTTTTGCAACTGTTTTAAGTTTATCAAA 694 Query 77645 ATC--AAATCTT-CCAT--CTA-TAACAAACATGTTCAAAGCTATAGATGCTAGATTACA 77698 ||| || |||| || || | |||||||| || | ||| |||||||| |||||||| Sbjct 693 ATCGAAAGTCTTGTTATTCGTATTCACAAACATATTGACAGCAATAGATGCCAGATTACA 634 Query 77699 AACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTT 77758 || || || || || | | ||||| || | ||||| || | ||| || ||||| Sbjct 633 CACAGCAACTTCCCCAGGGCCAGAGTATTGAATAACTTCGGTGCACAAATTGCTGCATTT 574 Query 77759 GATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA-TGAGTCCTTATAAAGAATAA 77817 ||| || || | | || || || ||| |||||| ||| ||||| ||||| || Sbjct 573 GATTGTACCAATGTGCTGATGATTAGATTTTCGATTGCAGTGA-TCCTTGTAAAGCATGT 515 Query 77818 ACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 | ||||| || ||||| | || ||| || ||| Sbjct 514 AAGGAGTTCCAGTTTCTACTTGCGATCTGAGAAT 481 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 77912 AGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGG 77971 |||||| ||| || ||||||||| |||||||||||| |||| |||||| |||||| || Sbjct 297 AGTATACAGCTCTTTAAATTCATCACCCCAAACATCAGCCAAGCCAGGGGATTCATACGG 238 Query 77972 GCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCA 78031 |||||||| |||| | || | | || |||| |||||| ||||| |||||||| Sbjct 237 ACACATCAAGCTCCAGATTTCGTCATTATATACACGTTCCATAAAAAGATCTGGTATCCA 178 Query 78032 TAGAGCA 78038 |||| || Sbjct 177 TAGACCA 171 Score = 89.7 bits (98), Expect = 7e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 76848 CTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATA 76907 ||||| ||| |||||||||| ||| ||||| | | ||||| |||| |||| | Sbjct 1756 CTCCACCCGAAGAAATGCATCGATGTGAGTTTCTCAGTCGTCGGATCTCCTATGTGAACA 1697 Query 76908 TTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTC 76967 |||| || || ||||||||| |||||||| | ||||||||||||| | ||| Sbjct 1696 TTCAGAGATTGCGATTGATCGATAAAAGCTCCACGGTCAGCCGCCATTTCGAGAATTACT 1637 Query 76968 TTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 ||||| || || ||||| | ||| ||| | | | ||| | |||||| |||| Sbjct 1636 TTTTGCGGTATCTCCCATACAGTCTTGTAGAGTGCTTTCAGATCATCAGGAA 1585 >seq2380 Length=22946 Score = 100 bits (110), Expect = 4e-16 Identities = 188/269 (70%), Gaps = 12/269 (4%) Strand=Plus/Minus Query 78372 AAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGC 78431 || || |||| |||||| || | || || | |||| || ||||||| | | ||||| Sbjct 21733 AATCACCTAGCCATTTGTTGCTTAATGGTACATGCAGTATCTAATGTCTGTGCAGCATGT 21674 Query 78432 GTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAG-CTGAT-TCTATGTCCCATT 78489 |||| ||| || || || | ||||||||||||||||| || || |||| | Sbjct 21673 ATAAAATATTGTTTTGACAGAAAATTGTATGTTTCAATAGCCTTATCGACATGTTC--AC 21616 Query 78490 GATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTAT 78549 |||||| |||| || || ||||||| ||||||||| ||||||||||| ||| || Sbjct 21615 CATGAATAGCTACAGCAACTCGCATCAGCATATGCTGTGGTCTTTCAACAACCTTTCCAT 21556 Query 78550 TTATTTTCAACAAGTATGATT--TTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAA 78605 | | || || ||| ||||| |||||| ||||||| | ||| | || |||| Sbjct 21555 TCAGCTTTAATAAG--TGATTAGTTTCCAGCATTTTAAATGTAGTATAACTATAATTGAA 21498 Query 78606 AAGTCTCTCTCGTAAATAATAACAGAATT 78634 | ||||| ||||| || || ||||||| Sbjct 21497 A--TCTCTGTCGTATATTATTGCAGAATT 21471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694349217618560