Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq8564 114 2e-20 seq5929 95.1 2e-14 >seq8564 Length=7362 Score = 114 bits (126), Expect = 2e-20 Identities = 190/270 (70%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 || ||||| || || | | ||| | || ||||| | || || || ||||| || || Sbjct 6941 CTGGACATCTGCTGGTTATTAGTACAGGCGTTAAATAGCGTTGGTGAAGCATGCGTAAAA 6882 Query 77033 CATTTTTCAGA-AAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAAT 77091 || ||| || || ||| ||||||||||| |||||| || || || | |||||| Sbjct 6881 TATCGTTCGGATAAATAG-TTGTATGTTTCTATAACTTTGTCAATGTCGTTCTCATGAAT 6823 Query 77092 TCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTT 77151 || ||||| || | ||||||||| || ||||||| ||||| |||| ||| ||||| Sbjct 6822 ACCAACAGCTACTCTCATCAACATGTGTTGAGGTCTCTCTACTATCTTGCCATTGATTTT 6763 Query 77152 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTT 77209 || || ||| | | || | || |||||||||| ||| || || ||||| |||| Sbjct 6762 CAGCAGGTAGCTTCTCTCAAGTGTCTTAAAACCAATATAATTATAACTGAAA--TCTCGA 6705 Query 77210 TCGTAAATAATAACCGAATTTAGTTTGTCC 77239 ||||| || ||| | |||| |||| | ||| Sbjct 6704 TCGTATATTATAGCAGAATCTAGTCTTTCC 6675 >seq5929 Length=11024 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 75443 CTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATA 75502 ||||| ||| |||||||||| ||| ||||| | ||||||| |||| |||| | Sbjct 1756 CTCCACCCGAAGAAATGCATCGATGTGAGTTTCTCAGTCGTCGGATCTCCTATGTGAACA 1697 Query 75503 TTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTC 75562 |||| || || ||||||||| |||||||| | ||||||||||||| | ||| Sbjct 1696 TTCAGAGATTGCGATTGATCGATAAAAGCTCCACGGTCAGCCGCCATTTCGAGAATTACT 1637 Query 75563 TTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 ||||| || || ||||| | ||| ||| | | | ||| | |||||| |||| Sbjct 1636 TTTTGCGGTATCTCCCATACAGTCTTGTAGAGTGCTTTCAGATCATCAGGAA 1585 Score = 93.3 bits (102), Expect = 6e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567 ||||| | | || ||||||||| |||||||||||| |||| ||||| |||||| |||| Sbjct 296 GTATACAGCTCTTTAAATTCATCACCCCAAACATCAGCCAAGCCAGGGGATTCATACGGA 237 Query 76568 CACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCAT 76627 |||||||| ||| | || | | || |||| |||||| ||||| ||||||||| Sbjct 236 CACATCAAGCTCCAGATTTCGTCATTATATACACGTTCCATAAAAAGATCTGGTATCCAT 177 Query 76628 AGAGCA 76633 ||| || Sbjct 176 AGACCA 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712606414529280