Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_031039.1 Length=251042 Score E Sequences producing significant alignments: (Bits) Value seq3312 95.1 2e-14 seq838 84.2 4e-11 >seq3312 Length=18308 Score = 95.1 bits (104), Expect = 2e-14 Identities = 219/320 (68%), Gaps = 20/320 (6%) Strand=Plus/Plus Query 17392 AAAAAATCA-ATATAGTGATGAATC---AATTGATCTTTTGGAAGGTTTAGAAGGTATCA 17447 ||||||| | || || | ||||||| |||| | |||| ||||||||||| | | | | Sbjct 8913 AAAAAATAATATTTA-TAATGAATCTTCAATTCAAATTTTAGAAGGTTTAGAGGCTGTTA 8971 Query 17448 GAACACGTTTTGATATGTATGTGGGTGGAAAAGAT--TCAGCGGCATTTCATCTTGTA-- 17503 ||| |||| || |||||| | ||| || ||| ||| | || |||| | || Sbjct 8972 GAAAACGTCCTGGAATGTATATTGGTTCAACTGATAATCA--TGGTTTACATCATTTAGC 9029 Query 17504 -AAAGAAGTAGTGGACAACTCTATTGATGAAGCGATCAATGGATATTGTACTAATATTAA 17562 |||| | || || || | ||||||||||| | |||| |||| ||||||||| Sbjct 9030 TTGAGAAATTGTTGATAATGCAATTGATGAAGCTCTTGCAGGATTTTGTTCTAATATTAT 9089 Query 17563 TATTACATATGATGAAAAACTCAATCAAATTTCAATTGAAGATAATGGTCGTGGTCTTCC 17622 | ||||| | || |||| || || | || ||||||||||| |||| | || |||| Sbjct 9090 TGTTACAATTAAT--AAAAATCGTTC-AGTTACAATTGAAGATGATGGAAGAGGAATTCC 9146 Query 17623 TACTGGTATTAATAAGAAGACTA-AAAAACCTACAATTGAAGTACTTTTTACTTATATGC 17681 ||||||| |||| | || ||| |||| |||||| |||||||| | | | Sbjct 9147 AACTGGTAAACATAA----ATTAGGTAAATCTACTCCTGAAGTTATTTTTACTACTTTAC 9202 Query 17682 ATGCAGGTGGAAAATTTAAT 17701 |||| ||||| |||||| || Sbjct 9203 ATGCTGGTGGTAAATTTGAT 9222 >seq838 Length=39025 Score = 84.2 bits (92), Expect = 4e-11 Identities = 166/240 (69%), Gaps = 12/240 (5%) Strand=Plus/Plus Query 36330 CGTTATAGTGAAGCTAGAATCCATAAATTTGCAGAAGAGGTTTTACTTTCAAATATTAAT 36389 ||||||| |||| | ||||| |||| |||| ||| ||| || | || | || Sbjct 27064 CGTTATACTGAATCAAGAATTAGTAAAATTGCCAGTGAG---TTAGTTAAAGATTTAGAT 27120 Query 36390 AA--AAACATTGTTGATTTTGTTCCAAACTTTGATAATACTTTAGAAGAGCCAAAAGTAT 36447 || ||||| ||| | |||||| | || |||||| ||| | |||| ||| ||| Sbjct 27121 AAGGAAACA--GTTAACTTTGTTTCTAATTTTGATGCTACAGAAAAAGAACCAGTAGTTC 27178 Query 36448 TACCTTC-TATTCTTCCAATGATATTAGTTAATGGTAGTCTCGGTATTGCTGCTGGTTAT 36506 |||| || |||| | | ||| |||||| |||||||| ||| || ||||||| || | Sbjct 27179 TACCATCATATTTTCCTAATT-TATTAGCTAATGGTACTCTTGGAATTGCTGTTGCTATG 27237 Query 36507 GCAACCAACCAACATCCACATAATATTAATGAAGTTATTGATGAGACTATTAAGTATATT 36566 ||||| | | || |||||| | |||||||||||||||| |||||| ||| || Sbjct 27238 GCAACAAGTATTCCACCTCATAATTTAAATGAAGTTATTGATG---CTATTATTTATGTT 27294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 802836884895680