Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_031081.1 Length=45206 Score E Sequences producing significant alignments: (Bits) Value seq680 192 2e-44 >seq680 Length=42727 Score = 192 bits (212), Expect = 2e-44 Identities = 461/697 (66%), Gaps = 28/697 (4%) Strand=Plus/Minus Query 33574 GTTCTCCTCGCGGTTGAACATCTTGTACACCGCGCCCGACGTAAGGTTAACAAACAGGCC 33633 |||| || ||||| |||| | | ||| | |||| ||| | ||| || ||| ||| Sbjct 34030 GTTCAGCTTGCGGTCGAACGTATGGTAAATGATACCCGCCGTCATGTTGACGAACTCGCC 33971 Query 33634 GTTCAGGTACGCATCAATCAGGTTAGCCGGGTACTGACTGCGCAGCGTGTCGATAAAGTC 33693 ||| |||||||| || | || | || ||| || | ||||| | |||| |||| Sbjct 33970 GTTTAGGTACGCCTCTACCAACTCTTTCGAGTATTGTTTTTCGAGCGTCTTGATATAGTC 33911 Query 33694 TGCCGGTAGATGGTGGTTGTCGGTGGTCTTCGCCCGGATCAGGCGCTTTTGGCTATCCTT 33753 | |||| ||||| |||||||| |||||||| ||| || ||||| ||| Sbjct 33910 TTCCGGCAGATGCGGGTTGTCGCGCGTCTTCGCTTTGATAAGCCGCTTCATCTCGTCCAA 33851 Query 33754 CTCCACCTCGAAGATTTGATACATCGCCCGGTAGCCTTCAGGCGTTGACACGATGACGAA 33813 ||| ||||||| | |||||||| ||| | |||||||| || ||||| || | | Sbjct 33850 CTCAGTGACGAAGATGCGGTACATCGCGCGGAAACCTTCAGGTGTGGACACAATAATCAT 33791 Query 33814 CTGGCGGACGAAGCCCGCACGCAGACGACCGAGCAATTTGTGATACGCCGCCAGCGCGAC 33873 |||||| || || |||||||||||| |||| ||| ||||| ||||| Sbjct 33790 CTGGCGCACTTTACCGCGACGCAGACGACCCAGCAGTTTCACGAACGCCATATATGCGAC 33731 Query 33874 GTCTTGCTTAGTAGTGTCGAATTCATCGGCGACAATCCATGCGGCGTTGACCCCGATCAG 33933 ||| | | | |||||||| || || ||| ||| |||||||| || |||| | Sbjct 33730 GTCCTCCGCCGAGGTGTCGAACTCGTCCATCACACACCACGCGGCGTTAACACCGACTAA 33671 Query 33934 GCGGGTATAGTTCTCCATTGATTCACAGATAACGCGGGT----CCATTTCCC-----TTT 33984 ||| ||||||| ||||| ||| ||||||| | || || | || | | ||| Sbjct 33670 GCGTTTATAGTTTTCCATCGATGCACAGATGATACGTGTGCGGCGGTTGCGCTGGATTTT 33611 Query 33985 C----------ACCAGCACGCTATAAATCTTGTCCTGCTTATTGAACTTCCACCGGAATC 34034 | |||||||| || ||||||| ||| ||| || ||||| | || | | Sbjct 33610 CTCATCCCAAACCCAGCACG-TAAAAATCTTCTCCACCTTGTTAAACTTGTATCGAATGC 33552 Query 34035 CAGCCTCGTCGAATGCCTTCTCCAGTTCCGGATACATGA----TTTTAACCAGGAGCGGA 34090 | ||| || | ||| | || ||||| ||||| | | ||||| || || Sbjct 33551 CGTACTCATCAAGCGCCGTTTCAAGTTCGGGATAAAGCACCTGCGTTAAC----AGTGGG 33496 Query 34091 ATAGTCGGTTCTGTAACGATGCCGTCATGCCCTGGGTTCAGGGTTAAAAGCTGGATGACC 34150 |||||||| |||| || ||||| ||| || |||| | | |||||||| | Sbjct 33495 TGCGTCGGTTCGGTAATCATACCGTCGCACCCCGGATTCAAAATCATCAGCTGGATCGCT 33436 Query 34151 TTACGCGCAGCGACCCACGACTTTCCACCGCCGAAGCCGGAACACAGGCCGAGGATTTTA 34210 |||||| | |||||||| | || || ||||| |||| || ||||||||||| ||||| Sbjct 33435 TTACGCACCGCGACCCAAGTTTTACCGCCGCCATAGCCCGAGCACAGGCCGAGAATTTTC 33376 Query 34211 GTCTTCGTGTCCCGCAGTAGTTCGACCTGGTGCGGCA 34247 ||| | |||| |||||| |||| ||||||||||| Sbjct 33375 GTCGTGATGTCTTCCAGTAGGTCGAACTGGTGCGGCA 33339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144474430203264