Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_031113.1 Length=44513 Score E Sequences producing significant alignments: (Bits) Value seq680 181 3e-41 >seq680 Length=42727 Score = 181 bits (200), Expect = 3e-41 Identities = 436/661 (66%), Gaps = 28/661 (4%) Strand=Plus/Plus Query 21090 CCCCACCAGGTGGAACTACTGCGCGATACAAAGACCAAAATCCTCGGCCTGTGTTCCGGC 21149 || |||||| | || |||||| || | | ||| ||||| ||||||||||| || ||| Sbjct 33341 CCGCACCAGTTCGACCTACTGGAAGACATCACGACGAAAATTCTCGGCCTGTGCTCGGGC 33400 Query 21150 TTCGGTGGCGGTAAGTCATGGGTTGCGGCGCGCAAGGTCATCCAGCTTCTGACACTGAAC 21209 | || |||||||| | ||||| |||| ||| || | |||||||| ||| |||| Sbjct 33401 TATGGCGGCGGTAAAACTTGGGTCGCGGTGCGTAAAGCGATCCAGCTGATGATTTTGAAT 33460 Query 21210 CCTGGTCATGACGGCATCGTTACAGAACCGACAATCCCCCTCCTGGTTAAAA----TCAT 21265 || || ||||| || |||| |||||||| ||| || ||||| | | Sbjct 33461 CCGGGGTGCGACGGTATGATTACCGAACCGACGCACCCACT----GTTAACGCAGGTGCT 33516 Query 21266 GTACCCGGAATTGGAAAAGGCGTTTGACGAGGCGGGCTTCCGGTGGAAGTTCAATAAGCA 21325 || || ||| | |||| |||| |||| ||| ||| | || | ||||| || ||| Sbjct 33517 TTATCCCGAACTTGAAACGGCGCTTGATGAGTACGGCATTCGATACAAGTTTAACAAGGT 33576 Query 21326 GGACAAGATCTATAACGTGCT----------TGTGAAAGGCAAATGGACCCGCG------ 21369 ||| ||||| | || |||||| || |||| | | | | |||| Sbjct 33577 GGAGAAGATTTTTA-CGTGCTGGGTTTGGGATGAGAAAATCCAGCGCAACCGCCGCACAC 33635 Query 21370 ---TTATCTGTGAATCAATGGAGAACTATACCCGCCTGATCGGGGTCAACGCCGCGTGGA 21426 | ||||||| ||| ||||| ||||||| ||| | |||| || |||||||||||| Sbjct 33636 GTATCATCTGTGCATCGATGGAAAACTATAAACGCTTAGTCGGTGTTAACGCCGCGTGGT 33695 Query 21427 TTGTTGCCGATGAATTCGACACCACGAAGCAGGACGTTGCGCTGGCGGCGTATCACAAAT 21486 ||| || || ||||||||| || | ||||||| || ||||| ||| Sbjct 33696 GTGTGATGGACGAGTTCGACACCTCGGCGGAGGACGTCGCATATATGGCGTTCGTGAAAC 33755 Query 21487 TGCTCGGCCGTCTGCGTGCGGGTCTGGTCCGCCAGTTTGTCATCGTGTCCACCCCGGAAG 21546 |||| || ||||||||| ||| || |||||| | | || |||||||| || |||| Sbjct 33756 TGCTGGGTCGTCTGCGTCGCGGTAAAGTGCGCCAGATGATTATTGTGTCCACACCTGAAG 33815 Query 21547 GCTACCGGGCAATGTACCAGATTTTCGAGGTGGAGAAAGACAACCAGAAACGCTTGATCC 21606 | | ||| || ||||||| || |||| ||| ||| | ||| || | ||| Sbjct 33816 GTTTCCGCGCGATGTACCGCATCTTCGTCACTGAGTTGGACGAGATGAAGCGGCTTATCA 33875 Query 21607 GGGCGAAGACCACGGACAACCACCATTTACCGGCAGACTTTATCGACACGCTCCGTAGTC 21666 |||||||| ||||||| ||| | |||| ||||| |||| | |||||| | | Sbjct 33876 AAGCGAAGACGCGCGACAACCCGCATCTGCCGGAAGACTATATCAAGACGCTCGAAAAAC 33935 Query 21667 AGTACCCAGCTAACCTGATCGACGCGTACCTGAACGGCCTGTTTGTTAACCTTACGTCGG 21726 | ||| | | || | || |||||||| |||||| ||| || ||| | ||| ||| Sbjct 33936 AATACTCGAAAGAGTTGGTAGAGGCGTACCTAAACGGCGAGTTCGTCAACATGACGGCGG 33995 Query 21727 G 21727 | Sbjct 33996 G 33996 Score = 91.5 bits (100), Expect = 4e-14 Identities = 92/116 (79%), Gaps = 8/116 (7%) Strand=Plus/Plus Query 7343 GACGTCCGCCATCGCGTAAAGGTCGAGGCCCAGGTTT---TTAGCGAACTGCAAGAACGC 7399 |||||| |||| |||||| |||||||||| ||| || |||||||||| |||||| Sbjct 19143 GACGTCGGCCAGCGCGTACAGGTCGAGGC---GGTACACCTTCGCGAACTGCATGAACGC 19199 Query 7400 CGCGACGCCGCCACCATAGCCCAGCCCCAATTCGCACG-CCTTACCGATCTGGCGT 7454 |||||||||||||||| || | |||||||| || | |||| |||||||| ||| Sbjct 19200 GCCGACGCCGCCACCATACCCTAAGCCCAATTC-CATGACCTTGCCGATCTGACGT 19254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142257799399800