Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_031756.1 Length=8155 Score E Sequences producing significant alignments: (Bits) Value seq8046 113 2e-21 >seq8046 Length=7925 Score = 113 bits (124), Expect = 2e-21 Identities = 379/583 (65%), Gaps = 8/583 (1%) Strand=Plus/Plus Query 1674 CCACACTGGATAGCGCGCCAAACACTGATCACTCACACTGAAAAGGAGCACCAGTTTAGC 1733 ||| | ||||||| | | || |||||||| |||| | |||| | ||||| | Sbjct 3748 CCAGAATGGATAGTGAGACAGACACTGATAGGACACAGTATGGAGGATGAGCAGTTCAAA 3807 Query 1734 TTCCCTGACATGGTACAGTGGGCCTATGATCATGACCTAACAGAGGATTGCAGTATAGCG 1793 || ||| |||||| |||| || ||||| |||||| |||| || || || | || Sbjct 3808 TTATCTGTCATGGTGCAGTACGCATATGACCATGACATAACGGACGAGAGCGCACTGGCA 3867 Query 1794 TTTGAGTACGCCCGCTTTGCAGAAGACGATGTAAACGCAGAGGCTTGGCTGAAATGTAAT 1853 ||||||||||| | | || || | || | || || | || | || || | || Sbjct 3868 TTTGAGTACGCACAGCTGGCGGACGTGGACGCCAATGCGGCAGCATTTCTAAACAGCAAC 3927 Query 1854 GCCCAGGCAAAGTTTGTTAAAGACTGTGGAATAATGGTCCGCCATTACAAGCGCGCTGAA 1913 |||||| |||| | |||||| | | |||| | | || |||||||| || || Sbjct 3928 TGCCAGGCCAAGTACCTAAAAGACGCGGTGACAATGTGCAGACACTACAAGCGTGCAGAG 3987 Query 1914 ATGCGCGCCATGTCAATGTCGCGGTGGATCCACA--AGAGGGTGCAAGAGATCGAGCATG 1971 | | ||| ||| | ||||||| | |||||| |||||| ||| || | | Sbjct 3988 AGGGAACAAATGAGTATGAGCCAGTGGATCAAATTTAGAGGGAGCAAGATATC-AG-AGG 4045 Query 1972 CAGGAGATTGGAAACACATAATGGCGTTTTTGAGGCACCAGAGGGTAGAGGTTATCACGT 2031 |||||||||||| | ||| | |||||| ||||| ||| |||||||| | | | | Sbjct 4046 AAGGAGATTGGAAGCCTATAGTAAAGTTTTTAAGGCATCAGGGGGTAGAGTTCGTGTCAT 4105 Query 2032 TTATTATAGCCTTAAAGCAGTTTTTGCGAGGAATTCCAAANNNNNATTGCTTAGTTTTTT 2091 | || ||||| ||| ||||| ||| | || || ||||| |||| |||| Sbjct 4106 TCCTTGCTGCCTTTAAGTCATTTTTAAAAGGTGTGCCCAAGAAGAATTGCATAGTGTTTT 4165 Query 2092 GGGGACCACCAAACTCTGGCAAAAC-TATGTTCTGCATGGGCCTGCTAAGGTGCCTAAAG 2150 ||||| || | | |||||| | ||| ||||||||| | || | || |||| Sbjct 4166 ATGGACCTGCAGATACAGGCAAATCATAT-TTCTGCATGAGTCTTTTGCAGTTCCTAGGT 4224 Query 2151 GGAAAGGTTATATCGTTTGCCAACTACAAGAGTAACTTTTGGCTCCAGCCGCT-GCTGGA 2209 || || ||||| | |||||| | || || |||||||||| ||||| | ||| || Sbjct 4225 GGCGCTGTAATATCATATGCCAATTCCAGTAGCCACTTTTGGCTGCAGCCCTTAGCT-GA 4283 Query 2210 CGCTAAGATTGGCATGCTAGATGACGCTACCCCCGCCTGCTGG 2252 | |||||| || | || || || || || || |||||| Sbjct 4284 CAGTAAGATAGGACTACTGGACGATGCGACGGCCCAGTGCTGG 4326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 25970042779664