Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq2779 127 2e-24 seq1592 104 2e-17 seq12857 95.1 1e-14 >seq2779 Length=20704 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||| || ||||| ||||| | || |||||||||||||| | ||| ||| | Sbjct 8376 AATGCAGATCTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTC 8317 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || | | | | |||||| |||||| ||||||||||| |||| |||||| Sbjct 8316 AGACACCATCGAGAACGTAAAAGCAAAAATCCAGGACAAAGAAGGAATTCCTCCCGATCA 8257 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| | || |||| ||| || || || |||||||| | |||| | |||||||||| Sbjct 8256 GCAACGTCTCATTTTTGCCGGTAAGCAGCTGGAAGATGGCAGAACTCTTTCCGATTATAA 8197 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| ||||| ||||||||||| || ||||| ||||| || ||||| || Sbjct 8196 TATTCAAAAGGAATCTACACTTCACTTAGTTTTGCGACTTCGCGGAGG 8149 >seq1592 Length=29089 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| |||||||| ||||| || ||||| ||||| ||||| || | Sbjct 413 ATGCAAATTTTCGTCAAAACCTTGACGGGAAAAACTATTACTTTGGAAGTAGAGGCTTCA 354 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | | | | || ||| |||||| |||||||||||| | || ||||| Sbjct 353 GATACGATCGAGAATGTCAAAGCCAAAATTCAAGACAAAGAAGGCATCCCTCCGGATCAG 294 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || | |||| |||||||| || |||| || || || ||||||| ||| Sbjct 293 CAGAGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAAT 234 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| ||||| || || |||||||| ||||| || ||||| || Sbjct 233 ATTCAAAAGGAATCCACTCTGCATTTAGTTTTGCGACTTCGCGGAGG 187 >seq12857 Length=4317 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||| ||||| || | ||||| || ||||| || ||||| || | | Sbjct 4044 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAGACCATCACATTGGAAGTCGAGGCATCC 3985 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| |||||| |||||||||||| | || |||||| Sbjct 3984 GATACAATTGAAAATGTCAAAGCCAAAATTCAGGACAAAGAAGGCATCCCTCCGGATCAA 3925 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || | |||| ||| || |||||| | |||||| | || | | ||||| ||| Sbjct 3924 CAGAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACGCTTTCTGATTACAAT 3865 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || |||||||| || |||||||| || | || || ||||| Sbjct 3864 ATTCAGAAGGAATCTACTCTGCATTTAGTTCTGAGGCTTCGTGGTGG 3818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421621997113504