Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2779 138 8e-28 seq121 104 2e-17 seq1592 102 6e-17 seq12857 87.8 1e-12 >seq2779 Length=20704 Score = 138 bits (152), Expect = 8e-28 Identities = 177/238 (74%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | || | || ||||| ||||| ||| ||||| ||||| |||||||| Sbjct 8601 CATTCCTCCACGAAGACGCAGGACCAGATGAAGTGTGGATTCCTTCTGGATATTGTAATC 8660 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 || ||||| || | || |||||||| || ||||||||||||| ||||||||||| Sbjct 8661 GGAAAGAGTTCT-GC-CATCTTCCAGCTGTTTTCCGGCAAAGATCAGGCGCTGCTGATCA 8718 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | || | |||||||| || ||||| |||| || ||| |||| ||||| | | Sbjct 8719 GGTGGAATGCCTTCCTTGTCTTGAATCTT-GGCTTTAACATTCTCTATAGTGTCAGAAGC 8777 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||| ||||| | || || || || || ||||| || ||||||||||||||||||||| Sbjct 8778 TTCTACCTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATTTGCATGATG 8835 Score = 107 bits (118), Expect = 1e-18 Identities = 160/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGC 44177 |||| ||| || | |||||| || |||||||| || || ||||||| ||||| Sbjct 8158 AGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAAAGAGTTCT- 8216 Query 44178 GCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTT 44237 || | || ||||||||||| |||||||| || | ||| |||||||| | ||| | |||| Sbjct 8217 GC-CATCTTCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGGAATTCCTT 8275 Query 44238 CCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACC 44296 | || ||| || || ||||| | |||| | |||||||| | | ||| || || | Sbjct 8276 CTTTGTCCTGGAT-TTTTGCTTTTACGTTCTCGATGGTGTCTGAAGCTTCGACTTCAAGA 8334 Query 44297 GTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || || || || || ||||| ||||| ||||| Sbjct 8335 GTAATGGTTTTGCCTGTAAGAGTTTTCACAAAGATCTGCAT 8375 Score = 95.1 bits (104), Expect = 9e-15 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | || | || ||||| ||||||||| ||||| ||||| |||||||| Sbjct 8373 CATTCCTCCACGAAGACGCAGGACCAGATGAAGCGTGGATTCCTTCTGGATATTGTAATC 8432 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 || ||||| || | || || || || || || || || |||| |||||||||||| Sbjct 8433 GGAAAGAGTTCT-GC-CATCTTCAAGTTGTTTGCCAGCGAAAATCAGACGCTGCTGATCC 8490 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | || || || ||| || || ||||| || ||||||| || | | | Sbjct 8491 GGGGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATGGTATCTGAAGCT 8550 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | || || || || || ||||| ||||| || ||||| ||||| Sbjct 8551 TCAACTTCAAGGGTGATGGTTTTGCCTGTGAGAGTCTTTACAAAGATCTGCAT 8603 >seq121 Length=74473 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44150 TTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATC 44209 ||||||||||| ||||| | ||| || | || |||||||| || || |||||||| Sbjct 8123 TTTTGGATGTTATAATCAGAGAGAGTACGTCCATCTTCCAGCTGTTTTCCAGCAAAGATA 8182 Query 44210 AAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCT 44269 | ||||||||||||| || | || || || ||| ||||| |||| || | Sbjct 8183 AGTCGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGAATCTTGGCTTTCACATTTTCG 8242 Query 44270 ATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAG 44329 ||||| || | || ||| ||||| | ||||| || || || |||||||| || ||||| Sbjct 8243 ATGGTATCAGAGGCTTCTACCTCGAGAGTAATGGTTTTACCAGTGAGGGTTTTGACGAAA 8302 Query 44330 ATTTGCATGATG 44341 || |||||| || Sbjct 8303 ATCTGCATGGTG 8314 >seq1592 Length=29089 Score = 102 bits (112), Expect = 6e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||| || || |||||||| |||| || ||| |||| || ||||| || || ||||| Sbjct 450 CTCTTTCTGAATGTTGTAGTCGGAAAGCGTGCGGCCGTCTTCAAGCTGTTTTCCAGCAAA 509 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||| | |||||||||| || | ||||| || ||| || ||| |||| | | Sbjct 510 GATCAATCTTTGCTGATCTGGGGGGATGCCTTCTTTATCCTGAATTTTC-GCTTTGACAT 568 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | || ||||| | | ||| ||||||| || || ||||||||||| | ||| || | Sbjct 569 TCTCGATCGTGTCTGAAGCTTCAACCTCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGA 628 Query 44325 CGAAGATTTGCAT 44337 | ||||| ||||| Sbjct 629 CAAAGATCTGCAT 641 Score = 100 bits (110), Expect = 2e-16 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||| ||| || | || || ||| |||||||| || |||||||| Sbjct 183 CATACCTCCGCGAAGTCGCAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATC 242 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 || | || || || |||| ||||||||||| || || || ||||| | ||||||||| | Sbjct 243 GGACAAGGTG-CGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCG 301 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 ||| | |||| |||| | | | || |||| | ||| | || || || | | Sbjct 302 GAGGGATGCCTT-CTTTGTCTTGAATTTTGGCTTTGACATTCTCGATCGTATCTGAAGCC 360 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| ||||| || |||||||| | ||| || ||||| |||||||| Sbjct 361 TCTACTTCCAAAGTAATAGTTTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 413 >seq12857 Length=4317 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| || || |||||||| | || ||| | || || || || || || |||||| Sbjct 4082 TCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCTTCGAGTTGTTTTCCTGCAAAG 4141 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||| | ||||||||| | ||| | ||||||||| ||| | | || |||| | || Sbjct 4142 ATCAATCTCTGCTGATCCGGAGGGATACCTTCCTTATCC-TGAATTTTGGCTTTGACATT 4200 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||| || || | | || || |||| || || || || || ||||| ||||| || Sbjct 4201 CTCTATCGTATCAGATGCCTCGACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGAC 4260 Query 44326 GAAGATTTGCAT 44337 ||| || ||||| Sbjct 4261 GAAAATCTGCAT 4272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359828926756068