Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq3165 105 9e-18 seq942 105 9e-18 >seq3165 Length=18988 Score = 105 bits (116), Expect = 9e-18 Identities = 192/275 (70%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 156164 AAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACC 156223 |||||||| ||||||||||||||| ||| || |||||||| | || | || || || Sbjct 5380 AAACAATCTTCTGACGTTAGCTTCACTTTCTCCAACATATTTATCCAAAATTTGTGGGCC 5439 Query 156224 GTTAACTAT-TTTGACGGGTCGTG-ATTTAAAAGCTTGAGCG-ATACAGCGAGCCATTAA 156280 || || || |||| | || || |||||| | ||| | || ||||||||||| Sbjct 5440 ATTTACAATCTTTGGCTC-TCTTGCATTTAACA--TTGTTCCTATTTGCCGAGCCATTAA 5496 Query 156281 TGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTTACAACCTAA 156340 ||||| || ||||| ||||| |||| ||| | |||||||| ||| || ||||| || Sbjct 5497 CGTTTTTCCCGTACCAGGTGGTCCATATAGCAAAATTCCTTTTACATGCTTGCAACCCAA 5556 Query 156341 TTTTTCAGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGAAAAATGAGAGA 156400 || | || || |||| | || ||||||||||||| |||||| Sbjct 5557 TTGAGTAACAATCTCCGTTGGAAAGACGCGAGATGCAAATGCTCTTCTGAAAATGGCGCT 5616 Query 156401 AAATTCTTTATCCAATCCCCCCACACCCATTTCCT 156435 |||||| |||||||| || || | |||||||| || Sbjct 5617 AAATTCCTTATCCAAACCACCAATACCCATTTTCT 5651 >seq942 Length=37279 Score = 105 bits (116), Expect = 9e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 50604 CCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAGATCAAACCGTT 50663 || || ||| |||||||| ||||| |||| ||||||||| |||||| ||| | Sbjct 15660 CCGGATGATAGGCGTATTATAATGTCCGCTTGGAATCCAGTCGATATTCCAAAAATGGCA 15719 Query 50664 TTACCTCCGTGTCATGTTTTATGTCAATTTTATGCCACAGACAATGTTTTATCCTGTCAA 50723 ||||| |||||||| ||| | |||||||||| | || || || || || Sbjct 15720 TTACCACCGTGTCACGTTATGGTACAATTTTATGTAAATAACGGTGAATTGTCTGCGCAG 15779 Query 50724 TGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACGTAGCTTCTTACGCT 50783 |||||||||| || |||||||||||||| || || || ||| |||| || || | Sbjct 15780 CTTTATCAAAGAAGCGCAGATATGGGTTTAGGAGTGCCATTTAACATAGCGTCATATTCC 15839 Query 50784 TTATTAACGTATTTGATCGCTCA 50806 ||||| || ||| |||||||||| Sbjct 15840 TTATTGACTTATATGATCGCTCA 15862 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 50301 TTCCCTCTATTTACGACTaaaaaaaTGTTTTGGCGCGGAATAGCGGAAGAACTTTTATGG 50360 ||||| |||| || || |||| | | || ||||| | ||||| |||||| | |||||| Sbjct 15229 TTCCCATTATTGACAACCAAAACAGTATTCTGGCGAGCAATAGTTGAAGAATTATTATGG 15288 Query 50361 TTCCTCGACGGATCTACAAATTCTTTAAAGTTATCGGAGAAGTCCGTTCGTATATGGGAC 50420 || || | ||||| |||||||| | | || | || ||| ||| ||| ||||| Sbjct 15289 TTTATCAAAGGATCAACAAATTCCAAAGAATTGACAGACAAGGATATTCATATTTGGGAT 15348 Query 50421 GCTCACGGTTCCAGATCAAATTTAGATCGTTTAGGATTTAATTACAGAAACAAAGGAGAT 50480 | | ||||| | | |||||| || || || | ||||| | |||| ||| Sbjct 15349 GAAAATGGTTCGCGTGCCTTCTTAGATTCTTGTGGTTTCACCGACAGAGAGGAAGGTGAT 15408 Query 50481 TTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGC 50521 || || ||||| || || || ||||||||||| ||||| || Sbjct 15409 TTGGGGCCTGTCTATGGATTCCAATGGAGACACTTTGGTGC 15449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666768312054240