Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2779 199 9e-46 seq121 179 9e-40 seq12857 156 1e-32 seq1592 154 4e-32 >seq2779 Length=20704 Score = 199 bits (220), Expect = 9e-46 Identities = 173/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||||||||| ||||| ||||| || || || || || ||| |||||| Sbjct 8372 CAGATCTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTCAGAC 8313 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| ||| ||| || ||||||||||||||||| ||||| || |||||| Sbjct 8312 ACCATCGAGAACGTAAAAGCAAAAATCCAGGACAAAGAAGGAATTCCTCCCGATCAGCAA 8253 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || ||||| || ||||| |||||||| || |||||| |||||||||| | Sbjct 8252 CGTCTCATTTTTGCCGGTAAGCAGCTGGAAGATGGCAGAACTCTTTCCGATTATAATATT 8193 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| ||||| ||||| || | |||||| |||| Sbjct 8192 CAAAAGGAATCTACACTTCACTTAGTTTTGCGACT 8158 Score = 192 bits (212), Expect = 1e-43 Identities = 166/206 (81%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||||||||| || ||||| |||||||| ||||| ||| || ||| Sbjct 8828 CAAATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTTGAGGTAGAAGCTTCTGAC 8769 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| |||||||| ||||| ||||| || || || || ||||| Sbjct 8768 ACTATAGAGAATGTTAAAGCCAAGATTCAAGACAAGGAAGGCATTCCACCTGATCAGCAG 8709 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||||||||| |||||||| || |||||| ||||||| || || Sbjct 8708 CGCCTGATCTTTGCCGGAAAACAGCTGGAAGATGGCAGAACTCTTTCCGATTACAATATC 8649 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| ||||| ||||| || Sbjct 8648 CAGAAGGAATCCACACTTCATCTGGT 8623 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||||||||| ||||| |||||||| || || ||| ||||| Sbjct 8600 CAGATCTTTGTAAAGACTCTCACAGGCAAAACCATCACCCTTGAAGTTGAAGCTTCAGAT 8541 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || || || ||||||||||| ||||| || ||||| ||||| Sbjct 8540 ACCATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCAGCAG 8481 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || ||||| || |||||||| || |||||| ||||||| || || Sbjct 8480 CGTCTGATTTTCGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGATTACAATATC 8421 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 8420 CAGAAGGAATCCACGCTTCATCTGGT 8395 >seq121 Length=74473 Score = 179 bits (198), Expect = 9e-40 Identities = 152/187 (81%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| ||||| || ||||| || || |||||||| ||| ||| || Sbjct 8307 CAGATTTTCGTCAAAACCCTCACTGGTAAAACCATTACTCTCGAGGTAGAAGCCTCTGAT 8248 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| ||||||||||| ||||| ||||| || || || ||||| Sbjct 8247 ACCATCGAAAATGTGAAAGCCAAGATTCAGGATAAAGAGGGAATTCCACCAGATCAGCAG 8188 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| || ||||||||||| ||||||||| | ||||| | ||||||||| || Sbjct 8187 CGACTTATCTTTGCTGGAAAACAGCTGGAAGATGGACGTACTCTCTCTGATTATAACATC 8128 Query 178104 CAAAAAG 178110 ||||||| Sbjct 8127 CAAAAAG 8121 >seq12857 Length=4317 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||| | ||||||||||| ||||| | ||||| || || || Sbjct 3813 CAAATTTTCGTCAAAACTTTGACAGGAAAAACTATCACTTTGGAGGTAGAGGCTTCGGAT 3754 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || || ||||| |||||||| || || ||||| || |||||| Sbjct 3753 ACGATCGAGAATGTAAAGGCTAAAATTCAAGACAAAGAGGGCATTCCTCCTGATCAGCAA 3694 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||| || || |||||||| || ||| | ||| | | |||||||| | Sbjct 3693 AGACTGATTTTCGCGGGCAAGCAGCTCGAGGACGGACGTACTTTGTCAGATTATAATATT 3634 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||||| ||||| |||||||| Sbjct 3633 CAGAAAGAATCTACACTACATCTTGT 3608 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || |||||||| || ||||| ||||| | || || || || || Sbjct 4269 CAGATTTTCGTCAAGACTCTCACCGGTAAAACCATCACATTGGAAGTCGAGGCATCTGAT 4210 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| |||||| || |||||||| || ||||| ||||||||||| ||||| Sbjct 4209 ACGATAGAGAATGTCAAAGCCAAAATTCAGGATAAGGAAGGTATCCCTCCGGATCAGCAG 4150 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || |||||||| ||||||||||| | || ||| | ||||| || | Sbjct 4149 AGATTGATCTTTGCAGGAAAACAACTCGAAGATGGTCGCACGCTTTCTGATTACAATATT 4090 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || |||||||| | ||| | ||| Sbjct 4089 CAGAAGGAATCAACTTTACATTTAGTT 4063 Score = 136 bits (150), Expect = 1e-26 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || |||||||| || || || ||||| | || || || || || Sbjct 4041 CAGATTTTCGTCAAGACTCTCACCGGTAAGACCATCACATTGGAAGTCGAGGCATCCGAT 3982 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| || ||||||||||||||||| ||||||||||| || || Sbjct 3981 ACAATTGAAAATGTCAAAGCCAAAATTCAGGACAAAGAAGGCATCCCTCCGGATCAACAG 3922 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || |||||||| || |||||||| | || ||| | ||||| || | Sbjct 3921 AGATTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACGCTTTCTGATTACAATATT 3862 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || ||||| || |||||| | ||| |||| || Sbjct 3861 CAGAAGGAATCTACTCTGCATTTAGTTCTGAGGCT 3827 >seq1592 Length=29089 Score = 154 bits (170), Expect = 4e-32 Identities = 164/214 (77%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || | || |||||||| || || ||||| || ||| ||| ||| Sbjct 866 CAGATTTTTGTGAAGACATTAACTGGAAAAACTATAACTCTCGAAGTTGAAGCCTCTGAC 807 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||||||||||||||| || || || || |||||||| Sbjct 806 ACTATCGAGAACGTAAAGGCGAAGATTCAGGACAAAGAGGGTATTCCACCTGACCAGCAG 747 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || |||||||| |||||||| ||||| ||| | || |||| ||||||| || | Sbjct 746 CGCTTGATTTTCGCCGGGAAACAGCTTGAAGACGGACGTAC-CTTGTCCGATTACAATAT 688 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 || || ||||| || || ||||| ||| | ||| Sbjct 687 TCAGAAGGAATCCACTCTCCATCTGGTTCTCAGA 654 Score = 152 bits (168), Expect = 1e-31 Identities = 165/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || |||||||| || || | || || || ||||| Sbjct 410 CAAATTTTCGTCAAAACCTTGACGGGAAAAACTATTACTTTGGAAGTAGAGGCTTCAGAT 351 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| |||||| || ||||| ||||||||||| ||||||||||| ||||| Sbjct 350 ACGATCGAGAATGTCAAAGCCAAAATTCAAGACAAAGAAGGCATCCCTCCGGATCAGCAG 291 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || ||||| || || ||||| || || ||| | || |||| ||||||| || | Sbjct 290 AGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCAC-CTTGTCCGATTACAATAT 232 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| ||||| || |||||| | |||||| |||| Sbjct 231 TCAAAAGGAATCCACTCTGCATTTAGTTTTGCGACT 196 Score = 147 bits (162), Expect = 5e-30 Identities = 158/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| | || ||||| || ||||| | ||||| ||| |||||| Sbjct 638 CAGATCTTTGTCAAAACCTTGACGGGAAAGACCATCACATTGGAGGTTGAAGCTTCAGAC 579 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| |||||| || |||||||| |||||||| ||||| || || |||||| Sbjct 578 ACGATCGAGAATGTCAAAGCGAAAATTCAGGATAAAGAAGGCATCCCCCCAGATCAGCAA 519 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||||||||| ||||| || | || ||| |||| || ||| | Sbjct 518 AGATTGATCTTTGCTGGAAAACAGCTTGAAGACGGCCGCACGCTTTCCGACTACAACATT 459 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || ||||| ||||| |||| |||| || Sbjct 458 CAGAAAGAGTCAACTTTGCA-CTTGGTT 432 Score = 114 bits (126), Expect = 3e-20 Identities = 133/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || |||||||| || ||||| ||||| | || || || || || Sbjct 182 CAGATTTTCGTCAAGACTCTCACCGGTAAAACCATCACATTGGAAGTCGAGGCATCTGAT 123 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| |||||| || ||||| ||||||||||| || |||||||| ||||| Sbjct 122 ACGATTGAGAATGTCAAAGCCAAAATTCAAGACAAAGAAGGCATTCCTCCGGATCAGCAG 63 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAA 178099 || | || ||||| || || ||||| || || ||| | || |||| ||||||| || Sbjct 62 AGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCAC-CTTGTCCGATTACAA 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203163579047976