Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1592 109 5e-19 seq2779 95.1 1e-14 seq12857 84.2 2e-11 >seq1592 Length=29089 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| |||| | | |||||||| || ||| ||||||||||| || || ||||| Sbjct 643 CCGCCACGTAATCTGAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCGGAC 702 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || |||| || ||||| || |||||||| |||| |||||| ||||| | ||| Sbjct 703 AAGGTACGTCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCAGGTGGA 762 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | | ||| |||||| ||| | || || | ||| | | |||||| | || || Sbjct 763 ATACCCTCTTTGTCC-TGAATCTTCGCCTTTACGTTCTCGATAGTGTCAGAGGCTTCAAC 821 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | ||||| ||||| || || | ||||| || |||||||||||| Sbjct 822 TTCGAGAGTTATAGTTTTTCCAGTTAATGTCTTCACAAAAATCTGCATG 870 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || || || | |||||| ||| ||||| ||||| || || ||||| Sbjct 187 CCTCCGCGAAGTCGCAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGAC 246 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| |||| || ||||||||||| ||||| |||| | ||| || |||| || Sbjct 247 AAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGGG 306 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | || || |||| | ||| |||| |||| || | | || || | ||| || Sbjct 307 ATGCCTTCTTTGT-CTTGAATTTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCTAC 365 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || ||||| ||||||| || || |||||||| ||||| Sbjct 366 TTCCAAAGTAATAGTTTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | |||| |||| || ||| ||||||||||| |||||||| Sbjct 415 CCACCACGTAGACGAAGAACCAAGTGCAAAGTTGACTCTTTCTGAATGTTGTAGTCGGAA 474 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||| || || || || |||| | || || || | ||| Sbjct 475 AGCGTGCGGCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGGGGG 534 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | || || || ||| ||| |||| |||| || | | ||||| | || || Sbjct 535 ATGCCTTCTTTATCC-TGAATTTTCGCTTTGACATTCTCGATCGTGTCTGAAGCTTCAAC 593 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || ||||||| || || || || |||||||| Sbjct 594 CTCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGACAAAGATCTGCAT 641 >seq2779 Length=20704 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||||| || ||| |||||||| || || || ||||| Sbjct 8605 CCTCCACGAAGACGCAGGACCAGATGAAGTGTGGATTCCTTCTGGATATTGTAATCGGAA 8664 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || ||||| || ||||| || ||||||||||| || || | ||| Sbjct 8665 AGAGTTCTGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAGGCGCTGCTGATCAGGTGGA 8724 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | ||| | || |||| ||| | | |||||| | || || Sbjct 8725 ATGCCTTCCTTGT-CTTGAATCTTGGCTTTAACATTCTCTATAGTGTCAGAAGCTTCTAC 8783 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || ||||| || || || || || ||||| || |||||| Sbjct 8784 CTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATTTGCATG 8832 >seq12857 Length=4317 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 41659 ATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTG 41718 |||||| || ||||||||||| || || || || || ||||| | || || || || Sbjct 3841 ATGCAGAGTAGATTCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCTTCAAGTTG 3900 Query 41719 CTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 || || || || |||| | |||||| |||| || | || || |||||| ||| ||| Sbjct 3901 TTTTCCAGCAAAAATCAATCTCTGTTGATCCGGAGGGATGCCTTCTTTGTCC-TGAATTT 3959 Query 41779 TTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCG 41837 | |||| || | | || ||| | ||| || |||| || || || ||||| | Sbjct 3960 TGGCTTTGACATTTTCAATTGTATCGGATGCCTCGACTTCCAATGTGATGGTCTTACCGG 4019 Query 41838 TCAGCGTCTTTACGAAAATCTGCAT 41862 | || ||||| |||||||||||||| Sbjct 4020 TGAGAGTCTTGACGAAAATCTGCAT 4044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462091317044800