Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latrodectus_20hesperus_20[genbank_20GCA_5F000697925.1_202014-06-04] 151,814 sequences; 1,137,104,656 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq8063 192 7e-44 seq9609 100 3e-16 seq139299 96.9 4e-15 seq16555 84.2 3e-11 >seq8063 Length=21912 Score = 192 bits (212), Expect = 7e-44 Identities = 168/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 ||||||||||| || ||||| ||||| ||||||||||| || || | ||| ||||||| Sbjct 13765 AAATTTTCATTGACAATTCCATCACTTGCTGCAAAAAATGCTAAAATATGAGATATAAAA 13824 Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 24638 | |||||| || | | ||| ||| | ||| ||||| | ||||||||||| ||| |||||| Sbjct 13825 TGTTTTTCTTCAGATTTTAATTTTTCCCAGTCATTCAAATCTTTAGATAAATCAACTTCT 13884 Query 24639 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 24698 || || |||||||| || || ||||| ||||||||||| | |||||| || || || | | Sbjct 13885 TCAACAGTCCAAAAAGAAGCTTCTGCTTTTTTATACATCTGCCAGATATCTTGGTACTCA 13944 Query 24699 ATTGGAAAAATAACAAATCTATTTGGATT 24727 |||||||| | |||||||||| |||||| Sbjct 13945 ATTGGAAATACAACAAATCTACGTGGATT 13973 Score = 98.7 bits (108), Expect = 1e-15 Identities = 164/232 (71%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 23932 TATAGATT--CTTTTAA-ATCCCAATTC-AGAAATCAATCTATCTGCGACAAACTCCATA 23987 |||| ||| ||||| | |||||||||| || ||| ||||| ||||| ||||| || ||| Sbjct 8962 TATACATTACCTTTTCACATCCCAATTCTAGCAAT-AATCTGTCTGCAACAAATTCTATA 9020 Query 23988 TATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGA 24047 ||| |||||| | |||| |||||||| || | ||||| | ||| | || | Sbjct 9021 TATTGTTTCATTAATTCATTGTTCATTCCAATTAAAGCCACTGGTAAAGCTTCTGTCAAG 9080 Query 24048 AATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGT 24107 |||| ||||||||||| || || || || || || | ||| ||| ||| | ||| Sbjct 9081 AATTGTTGTTCAATAGCCACTGCATCAGTAATTATTTGTACAACTCTTTTTTCTGTGGGT 9140 Query 24108 GGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 24159 || | ||| || ||||||| | ||||| ||||| || || ||||||| Sbjct 9141 TTATTAACTAAGTGGCTAAACATGAGGCATGCAAAATCACAATGAAGACCCT 9192 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 24385 TTTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 24444 ||||| | | ||||| | ||||||||||| | ||| ||||||||||| ||||| | | Sbjct 13307 TTTCAGTCTTGTCTTTGATGTATGTATCAATTAGAAGGCTATACATTTCAGAATGTACAT 13366 Query 24445 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATAC 24504 ||||||| || ||||| ||||| || || ||||| || || || | || |||||| || Sbjct 13367 TTTCAATTGCTATTTGGAATCCATAAAAGCATCTTGCTTCTGTTACTTGCACTTCTTGAC 13426 Query 24505 AAAATCGTTC 24514 ||||| ||| Sbjct 13427 TAAATCTTTC 13436 >seq9609 Length=20973 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||| |||||||||||||| || ||||| | |||||||| || || ||||| || || | Sbjct 20539 TACCTGAAATTCTCCAGATAAAACTCTTCTTGTGTAAATGTTGCTAGTATATGGCTCAAT 20598 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 || |||||||| || || || |||||||| || ||||| ||||| || || | || | Sbjct 20599 GGATTCATTATTACCTAATATCTGAGCAGTAGAAGCAGTGGGCATTGGAGCAAGTAAAAG 20658 Query 53269 ACTATTTCTAAGACC 53283 ||||| || ||||| Sbjct 20659 GCTATTCCTCAGACC 20673 >seq139299 Length=970 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 |||||| | |||||||| || |||||||| || || ||||||||||| || | || || Sbjct 88 AGTTCCGGAGTTAAATAATGTTGGAGAAGCATGAGTGAACCATTTTTCTGACATTAAATG 147 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 ||| || || || || | || ||||| ||||||||| || | || | ||| || Sbjct 148 GTAAGTTTCAATGGCAGCATCAATATCATCAGAATGAATTCCGACAGATACTCTCATCAA 207 Query 54544 CATGTGCTGAGGTCTTTCAAC 54564 |||||||||||| |||||||| Sbjct 208 CATGTGCTGAGGCCTTTCAAC 228 >seq16555 Length=11409 Score = 84.2 bits (92), Expect = 3e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||| |||||||| |||||||| | |||| | | || | | ||||||||||| Sbjct 11223 CCAGGGCATTCATCAGGACACATAAGACTCCACATTTCATCTTTTTCAACTCGTTTCATG 11164 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCC 54099 || ||||| |||||||| | || ||| || | |||||| | | || || || ||||| Sbjct 11163 AAAAGATCTGGAATCCACAAGGC-ATAGAACAAATCTCTTGCCCGTTGCTCTTCTTTTCC 11105 Query 54100 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 54159 |||||| || || | || || || | | ||||||| |||||| || || || || || Sbjct 11104 TGTATTTTTCTTTAATTCAAGAAATTCAAATATATCAGCATGCCAAGGCTCTAAATAAAT 11045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592594909362720