Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latrodectus_20hesperus_20[genbank_20GCA_5F000697925.1_202014-06-04] 151,814 sequences; 1,137,104,656 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq8063 140 3e-28 seq16555 116 3e-21 seq2770 98.7 9e-16 >seq8063 Length=21912 Score = 140 bits (154), Expect = 3e-28 Identities = 175/237 (74%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 57506 CGATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCC 57565 ||| ||||||||||| | |||||||| ||||||||||| | ||||| ||||| || | Sbjct 13995 CGAAGAACCACTTTTAAAGGAGAATCCACGTAGATTTGTTGTATTTCCAATTGAGTACCA 13936 Query 57566 AGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGA 57625 ||| || ||| | ||||| ||||| |||||||| || |||||||| || |||||||| || Sbjct 13935 AGATATCTGGCAGATGTATAAAAAAGCAGAAGCTTCTTTTTGGACTGTTGAAGAAGTTGA 13876 Query 57626 CCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTG-AGAGAA--ATTTTAT 57682 | ||||| ||| ||| || ||||| | | |||||| ||| || ||||||| Sbjct 13875 TTTATCTAAAGATTTGAATGACTGGGAAAAATT---AAAATCTGAAGAAAAACATTTTAT 13819 Query 57683 TAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 || | || || ||||| || ||| ||||| ||||| || || |||||||| Sbjct 13818 ATCTCATATTTTAGCATTTTTTGCAGCAAGTGATGGAATTGTCAATGAAAATTTGGT 13762 Score = 111 bits (122), Expect = 1e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 ||| ||||||||| |||||||||||||| || || || ||||||||||| ||||| || Sbjct 13440 GGTGGAAAGATTTAGTCAAGAAGTGCAAGTAACAGAAGCAAGATGCTTTTATGGATTCCA 13381 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856 | | || |||||||| || ||||| ||||||||| || || || ||||| ||| | || Sbjct 13380 AATAGCAATTGAAAATGTACATTCTGAAATGTATAGCCTTCTAATTGATACATACATCAA 13321 Query 57857 GGACAA 57862 ||||| Sbjct 13320 AGACAA 13315 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/148 (73%), Gaps = 6/148 (4%) Strand=Plus/Minus Query 58333 AAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaa 58392 ||||||| |||||||||||| | | || || ||||| |||||||| || ||||| | Sbjct 6640 AAAATCCTTTTGATTTTATGGAGCATATTAGCCTTGAGGGAAAGACAAATTTCTTCGAGA 6581 Query 58393 aaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAGTTGGAGGACGATA 58452 |||||||| | |||||||| || | || || ||| | ||||| ||| ||| | Sbjct 6580 AAAAAGTTGGAGAATATCAGAAGTGTGGTGTCATG---GCAAACAA---GGAAGACCACC 6527 Query 58453 TTTTCACTTTGGATGCTGCCTTTTAATG 58480 |||||| | ||||| | ||||||||| Sbjct 6526 GATTCACTCTTGATGCAGACTTTTAATG 6499 >seq16555 Length=11409 Score = 116 bits (128), Expect = 3e-21 Identities = 140/189 (74%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 23308 CATC-GGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCG 23366 |||| |||||||| |||||||||||| || |||||||| ||| |||| |||||||| | Sbjct 11213 CATCAGGACACATAAGACTCCACATTTCATCTTTTTCAACTCGTTTCATGAAAAGATCTG 11154 Query 23367 GTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTT 23426 | ||||| | || ||||||| || | || || ||| ||||| || || || || | Sbjct 11153 GAATCCACAAGGCATAGAACAAATCTCTTGCCCGTTGCTCTTCTTTTCCTGTATTTTTCT 11094 Query 23427 TCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGC 23486 | || || | ||| || || | || |||||||| ||||| | |||| ||||| || | Sbjct 11093 TTAATTCAAGAAATTCAAATATATCAGCATGCCAAGGCTCTAAATAAATTGCAAATGCTC 11034 Query 23487 CCGGTCTCT 23495 | ||||||| Sbjct 11033 CAGGTCTCT 11025 >seq2770 Length=41231 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||||||||| |||| || ||||| || || | || ||||| || Sbjct 20743 ATGCAAATATTCGTAAAGACCTTGACTGGTAAAACAATAACTCTAGAGGTTGAGCCCAGT 20802 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || || | ||| || || |||||| | || || || ||| Sbjct 20803 GATACTATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGCATTCCTCCTGATCAG 20862 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||||| || || || || || |||||| | ||||| | || || | | || ||||| Sbjct 20863 CAGCGACTTATTTTTGCAGGAAAACAGCTTGAAGA-TGGCAGAACATTATCAGACTATAA 20921 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| ||||| ||||| ||||| || || ||||| || || || Sbjct 20922 TATTCAAAAGGAATCCACTCTGCATCTTGTGCTCAGACTTAGAGGTGG 20969 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || || | || || ||||| || || | || || ||||| Sbjct 19375 ATGCAAATCTTCGTTAAAACATTAACTGGTAAAACCATTACGTTAGAAGTAGAACCCAGT 19434 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | ||| || |||||||| | || ||||| ||| Sbjct 19435 GACACGATAGAAAATGTTAAAGCAAAAATTCAAGATAAGGAAGGAATTCCTCCCGATCAG 19494 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | |||| || || || ||||| | ||||| | ||| | || ||||| Sbjct 19495 CAGAGGTTAATCTTTGCAGGTAAACAACTTGAAGATGGTCGCACTCTATCAGACTATAAT 19554 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||||||||| || |||||||| |||||||| | || || |||| Sbjct 19555 ATTCAAAAAGAATCTACCCTTCATCTTGTACTTAGGTTAAGAGGTGGTA 19603 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || || ||||| || || || || || || | || || ||||| Sbjct 20287 ATGCAGATTTTTGTCAAAACTCTTACTGGTAAGACCATTACACTTGAGGTGGAACCAAGT 20346 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| |||||| | || || || ||||| | || || || || Sbjct 20347 GACACAATTGAAAATGTCAAAGCTAAGATTCAAGATAAAGAAGGTATTCCTCCTGATCAA 20406 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTATA 31370 ||| | || || || ||||| || ||| | ||||| || ||||| || |||||| Sbjct 20407 CAGAGACTCATTTTTGCTGGTAAGCAGCTAGAAGATGGTCGCACACTATCAG--ATTATA 20464 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||||||||||| || ||||| || ||| | ||| |||| || |||| Sbjct 20465 ACATTCAAAAAGAATCTACACTTCACCTTGTATTAAGATTGAGAGGTGGTA 20515 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 31189 AAACA-TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||||| |||| || || || || || || || ||||| || ||||| | || ||||| | Sbjct 18914 AAACAATGCAGATCTTTGTGAAAACACTTACTGGCAAGACCATCACATTAGAGGTTGAGC 18973 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | |||| | |||| || || | ||| ||| || ||||| | || || | Sbjct 18974 CTAGTGACACCATAGAAAATGTTAAGGTTAAAATTCAGGATAAAGAAGGAATCCCTCCTG 19033 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGAT 31366 |||||||| | || || || |||||||| || | ||||| | | | || || || Sbjct 19034 ACCAGCAGAGGCTGATTTTTGCTGGCAAGCAACTCGAAGA-TGGACGTACATTGTCAGAC 19092 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| || ||||||||||| || || |||| ||||| ||||| || || Sbjct 19093 TATAACATCCAGAAAGAATCGACACTACACTTGGTTCTTAGGCTGAGAGGTGG 19145 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 ||||| || ||| | || || || |||||| | || || || ||||| ||||| | || Sbjct 21405 GACAAAGAGGGCATTCCACCAGATCAGCAGAGGCTTATTTTTGCTGGTAAACAACTAGAG 21464 Query 31346 GACTCTATGACTATGAGC-GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || | | ||||| || || ||||||||||| |||||||||||||| || Sbjct 21465 GATGGTAGAAC-ATTATCAGATTACAATATACAAAAAGAATCTACTCTTCATCTGGTGCT 21523 Query 31405 TAGACTGAGGGGCGG 31419 |||||| || || || Sbjct 21524 TAGACTTAGAGGAGG 21538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444920480246880