Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latrodectus_20hesperus_20[genbank_20GCA_5F000697925.1_202014-06-04] 151,814 sequences; 1,137,104,656 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq8063 183 4e-41 seq139299 102 1e-16 seq9609 100 4e-16 seq16555 87.8 2e-12 >seq8063 Length=21912 Score = 183 bits (202), Expect = 4e-41 Identities = 166/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 36542 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 36601 ||||||||||| || ||||| ||||| ||||||||||| || || | ||| ||||||| Sbjct 13765 AAATTTTCATTGACAATTCCATCACTTGCTGCAAAAAATGCTAAAATATGAGATATAAAA 13824 Query 36602 TATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 36661 | |||||| | | | ||| ||| | ||| ||||| | ||||||||||| ||| |||||| Sbjct 13825 TGTTTTTCTTCAGATTTTAATTTTTCCCAGTCATTCAAATCTTTAGATAAATCAACTTCT 13884 Query 36662 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 36721 || || |||||||| || || ||||| ||||||||||| | |||||| || || || | | Sbjct 13885 TCAACAGTCCAAAAAGAAGCTTCTGCTTTTTTATACATCTGCCAGATATCTTGGTACTCA 13944 Query 36722 ATTGGAAAAATAACAAATCTATTTTGATT 36750 |||||||| | |||||||||| | |||| Sbjct 13945 ATTGGAAATACAACAAATCTACGTGGATT 13973 Score = 113 bits (124), Expect = 6e-20 Identities = 159/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 35963 TTTTTAAATCCCAATTC-AGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCAT 36021 |||| | |||||||||| || ||| ||||| ||||| ||||||||||||||| |||||| Sbjct 8973 TTTTCACATCCCAATTCTAGCAAT-AATCTGTCTGCAACAAATTCTATATATTGTTTCAT 9031 Query 36022 CATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTC 36081 | |||| |||||||| || | ||||| | ||| | || | |||| |||||| Sbjct 9032 TAATTCATTGTTCATTCCAATTAAAGCCACTGGTAAAGCTTCTGTCAAGAATTGTTGTTC 9091 Query 36082 AATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAA 36141 ||||| || || || || || || || ||| ||| ||| | ||| || | ||| Sbjct 9092 AATAGCCACTGCATCAGTAATTATTTGTACAACTCTTTTTTCTGTGGGTTTATTAACTAA 9151 Query 36142 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 36182 || ||||||| | ||||| ||||| || || ||||||| Sbjct 9152 GTGGCTAAACATGAGGCATGCAAAATCACAATGAAGACCCT 9192 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 36408 TTTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 36467 ||||| | | ||||| | ||||||||||| | ||| ||||||||||| ||||| | | Sbjct 13307 TTTCAGTCTTGTCTTTGATGTATGTATCAATTAGAAGGCTATACATTTCAGAATGTACAT 13366 Query 36468 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 36527 ||||||| || ||||| ||||| || || ||||| || || || | || |||||| || Sbjct 13367 TTTCAATTGCTATTTGGAATCCATAAAAGCATCTTGCTTCTGTTACTTGCACTTCTTGAC 13426 Query 36528 AAAATCGTTC 36537 ||||| ||| Sbjct 13427 TAAATCTTTC 13436 >seq139299 Length=970 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||| | |||||||| || |||||||| || || ||||||||||| || | || || Sbjct 88 AGTTCCGGAGTTAAATAATGTTGGAGAAGCATGAGTGAACCATTTTTCTGACATTAAATG 147 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||| || ||||| || | || ||||| ||||||||| || | || | ||| || Sbjct 148 GTAAGTTTCAATGGCAGCATCAATATCATCAGAATGAATTCCGACAGATACTCTCATCAA 207 Query 66575 CATGTGCTGAGGTCTTTCAAC 66595 |||||||||||| |||||||| Sbjct 208 CATGTGCTGAGGCCTTTCAAC 228 >seq9609 Length=20973 Score = 100 bits (110), Expect = 4e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||| |||||||||||||| || ||||| | |||||||| || || ||||| || || | Sbjct 20539 TACCTGAAATTCTCCAGATAAAACTCTTCTTGTGTAAATGTTGCTAGTATATGGCTCAAT 20598 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 || |||||||| || || || |||||||| || ||||| ||||| || || | || | Sbjct 20599 GGATTCATTATTACCTAATATCTGAGCAGTAGAAGCAGTGGGCATTGGAGCAAGTAAAAG 20658 Query 65300 ACTATTTCTAAGACC 65314 ||||| || ||||| Sbjct 20659 GCTATTCCTCAGACC 20673 >seq16555 Length=11409 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071 ||||| |||||||| |||||||| | |||| | | || | | ||||||||||| Sbjct 11223 CCAGGGCATTCATCAGGACACATAAGACTCCACATTTCATCTTTTTCAACTCGTTTCATG 11164 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCC 66130 || ||||| |||||||| | || ||| || |||||||| | | || || || ||||| Sbjct 11163 AAAAGATCTGGAATCCACAAGGC-ATAGAACAAATCTCTTGCCCGTTGCTCTTCTTTTCC 11105 Query 66131 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATAT 66190 |||||| || || | || || || | | |||||| |||||| || || || || || Sbjct 11104 TGTATTTTTCTTTAATTCAAGAAATTCAAATATATCAGCATGCCAAGGCTCTAAATAAAT 11045 Query 66191 GGCCATAACTCCAGG 66205 || | ||||||| Sbjct 11044 TGCAAATGCTCCAGG 11030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656923801931760