Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latrodectus_20hesperus_20[genbank_20GCA_5F000697925.1_202014-06-04] 151,814 sequences; 1,137,104,656 total letters Query= NC_005045.1 Length=42519 Score E Sequences producing significant alignments: (Bits) Value seq3139 120 8e-23 >seq3139 Length=44538 Score = 120 bits (132), Expect = 8e-23 Identities = 370/572 (65%), Gaps = 23/572 (4%) Strand=Plus/Plus Query 38903 GGTGACCGTACCTCGGCCACCAGCTTCGACGTGAACTGGGCGTTGAAGGGTGTCGAGAAA 38962 ||||||||||| ||| | | | || ||||| |||| | ||||| | || ||| Sbjct 8704 GGTGACCGTACATCGTACGCGAACTATGACGTACACTGCGACCTGAAGCCCCTGGATAAA 8763 Query 38963 TCGGCCTCTATCAACTGCATCGGGATCACCGCCGCCCTCCAGGGCTACCGGGCTGACATC 39022 || ||| | ||| | || |||||||| || | ||||| | || ||||| | Sbjct 8764 TCCGCCAGCGTGGCATGCGTAGGTATCACCGCATCCTTGCAGGGTAAGCGTGCTGATCTG 8823 Query 39023 CTGATCCCTGACGACATCGAGACCACGAAGAACGGCCTCACCGCCACCGAGCGGGCGAAG 39082 ||||| || || || |||||||| ||||| ||||| || || || || | || | | Sbjct 8824 CTGATTCCAGATGATATCGAGACTACGAACAACGGTCTGACGGCTACAAACCGTGAAGTG 8883 Query 39083 CTGACACGGCAGTCGCAGGAGTTCACCTCTATCTGTACCCACGGTAAGATTCTCTACCTG 39142 ||| || || |||| ||| || | || ||| ||||| |||| ||| |||||| Sbjct 8884 CTGCTGTTGCGCTCCAAGGACTTCTCCGCGATTAATACGCACGGGAAGACTCTGTACCTG 8943 Query 39143 GGTACGCCGCAGTCCCGCGAATCGATCTACAACGGCCTACCCGCGCGTGGCTTCCTGATG 39202 || || |||||| || || |||||||| ||| | ||||||||||| ||| Sbjct 8944 GGGACACCGCAGACCAAAGACAGTATCTACAAGACCCTGGCGGCGCGTGGCTTTGAGATT 9003 Query 39203 CGCATCTGGCCGGGCCGGTTCCCGACCCTGGACGAGCAGGCGCGTTATGGCG----ACTG 39258 ||| | ||||| || || | || ||| | || || ||| ||||| | || | || Sbjct 9004 CGCGTATGGCCTGGTCGCGTACCTACCGTAGAAGAAGAGGAACGTTACGCCGGAACATTG 9063 Query 39259 GCTCGCACCCTCTATCCTGGCGCGCATCGCTCGCCTGGAGGAGAAAGGCCACAACCCGCG 39318 ||| || || | || | || ||| ||| || | |||| Sbjct 9064 GCT----CCGATGATTCAGGAG---ATGATTCG---------GAACGG---CGCGGCGCG 9104 Query 39319 CACCGGCAAGGGCCTCGACGGCACCCGTGGCTGGGCGGCTGACCCGCAGCGCTACAACGA 39378 || || ||||| ||||||| ||| ||| || | ||||| ||| |||| || Sbjct 9105 TACAGGTTTCGGCCTGGACGGCAACCGCGGCGAGGTAACCGACCCCATGCGTTACACGGA 9164 Query 39379 AGAAGACCTGCTCGACAAGGAACTGGACCAAGGCCCCGAGGGCTTCCAGCTTCAGTACAT 39438 ||| || | ||| ||||||||| ||| ||||| ||||| |||||| | |||||||| Sbjct 9165 AGATGATTTAATCGGCAAGGAACTTGACTTCGGCCCTGAGGGGTTCCAGTTGCAGTACAT 9224 Query 39439 GCTGGACACCAGCCTCGCCGACGAGCAGCGTA 39470 |||||| || || || || | ||||||| Sbjct 9225 GCTGGATACGTCACTAGCTGATGCACAGCGTA 9256 Score = 80.6 bits (88), Expect = 7e-11 Identities = 161/236 (68%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 16084 GCTGTGGGCCGAGCAGGGCAAACTCTGCCCGCTCTGCGGCAAGCCCATCGACATCAGCGT 16143 ||||| ||| | ||||| || | ||| | ||||| || ||||| || || |||| | Sbjct 30738 GCTGTATGCCCAACAGGGTAATGTATGCGCCCTCTGTGGTAAGCCTATTGATTTCAGTAT 30797 Query 16144 GAAGGGCGAGGCCGTGATGGATCACGACCACGAGACGGGCTTGGTGCGGGGTGTCCTGCA 16203 ||||||||||| || || |||||||| || || || | || |||| ||||| Sbjct 30798 CAAGGGCGAGGCAGTCGCCGACCACGACCATATTACAGGTCTGATACGTGGTGCACTGCA 30857 Query 16204 CCGGTCCTGCAACACTGCCGAAGGCAAGATCACGAATGCGGCGGGTTCCTGGGGCTGCAA 16263 ||| |||||||| | || || || ||| | | || || || || |||||| ||| | Sbjct 30858 CCGCTCCTGCAATGCAGCAGAGGGTAAGGTGGCTAACGCCGCCGGCCGCTGGGG-TGCGA 30916 Query 16264 ATCG-ATGCGGTATTCCGACATCATCCCCTACCTGCACTCCCTCCTGGCGTACTTG 16318 | | |||| ||| || |||| | || | ||| | ||| ||||||||| || Sbjct 30917 AGAGTATGCAGTACGACGCCATCCTGCCTTGGCTGGAGAACCTGCTGGCGTACCTG 30972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135694129999708